Protein Concepts Dictionary

Tableau information

Concept source:  d2yfia2  amino acid (a.a.) range (ASP195)(SER406)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HEEHHHHEEHHHEEEEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP195)  (ARG200) H1
	  (GLY204)  (GLY209) E2
	  (GLY209)  (VAL215) E3
	  (PHE222)  (CYS228) H4
	  (MET231)  (THR236) H5
	  (HIS239)  (GLY246) H6
	  (ASP252)  (ALA256) H7
	  (LYS261)  (ALA267) E8
	  (GLY271)  (TYR277) E9
	  (PRO281)  (VAL287) H10
	  (PRO290)  (TRP296) H11
	  (PRO300)  (GLY310) H12
	  (GLY321)  (PHE327) E13
	  (THR329)  (LEU333) E14
	  (ASN337)  (HIS343) E15
	  (ASN348)  (ASP359) E16
	  (ALA364)  (ASN377) H17
	  (GLY382)  (LEU399) H18
	  (GLY401)  (SER406) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
E2       99.6°   E2                                                                                                                            
E3      160.2°   61.2°   E3                                                                                                                     
H4       68.9°  140.5°  128.3°   H4                                                                                                              
H5       94.4°   61.6°   80.6°  -81.1°   H5                                                                                                       
H6       27.6°   95.4°  148.1°  -56.5°  -68.7°   H6                                                                                                
H7       90.5° -156.9° -106.0°   62.6° -138.7°  102.8°   H7                                                                                         
E8       94.3°  -96.7°  -84.3°  121.2° -157.7°  121.9°   61.7°   E8                                                                                  
E9       73.5°   90.3°  108.8°   50.4°  -32.8°  -46.0°  112.5°  166.9°   E9                                                                           
H10     -61.2°   41.1°   99.1° -124.9°   80.9°   68.4° -135.5°  -85.5°  -92.6°   H10                                                                   
H11      85.8° -159.2° -110.7°  -60.1° -138.4°  -98.3°    4.7°   62.8° -110.4°  132.7°   H11                                                            
H12     115.7° -123.7°  -75.9°  -94.2° -145.7° -135.4°  -34.4°   41.7° -139.6°  127.0°  -38.4°   H12                                                     
E13    -106.8°  -88.7°  -70.6° -130.6°  146.4°  134.2°  -68.4°  -13.7°  179.1°   86.8°   70.5°   41.2°   E13                                              
E14      62.4°  102.9°  123.2°   37.7°  -48.4°  -36.5°  100.1°  151.6°  -15.8°  -95.9°  -97.3° -131.5°  165.0°   E14                                       
E15    -126.3°  -63.9°  -43.6° -153.3°  115.6°  147.2°  -93.4°  -44.0°  148.3°   80.0°  -96.7°   60.0°  -30.9°  164.1°   E15                                
E16      34.2°  124.7°  161.5°  -34.7°  -87.7°  -29.4°   73.9°  110.7°  -56.4°  -93.0°   69.6°  107.7°  124.3°  -40.9°  153.8°   E16                         
H17    -151.6°  -52.4°    8.7°  134.2°   76.9°  141.8° -114.0°  -85.8°  107.3°   90.6° -118.7°  -82.7°  -72.1°  122.5°  -42.7°  163.4°   H17                  
H18    -150.2°  -77.2°  -28.6°  131.2°  109.2°  172.1°  -83.8°  -57.3°  135.5° -103.9°  -88.2°  -50.3°  -44.1°  147.4°  -26.1°  157.7°  -33.4°   H18           
H19     -89.0°  170.5° -110.6°   39.7°  113.8°  -90.3°  -25.1°  -86.8°   88.1° -148.4°  -24.6°  -54.5°  -92.8°   77.2° -114.2°   61.5°  119.3°  -97.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2yfia2 :   (ASP195)  (SER406)   [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
 d2xsha2 :   (ASP195)  (SER406)   [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]
 d1wqla2 :   (ASP196)  (SER406)   [view usage] : d.129.3.3 |TBP-like |Bet v1-like |Ring hydroxylating alpha subunit catalytic domain |Large subunit of cumene dioxygenase cumA1 |Pseudomonas fluorescens [TaxId: 294]
 d3gzxa2 :   (ASP195)  (THR405)   [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Comamonas testosteroni [TaxId: 285]
 d2xr8a2 :   (ASP195)  (SER406)   [view usage] : d.129.3.0 |TBP-like |Bet v1-like |automated matches |automated matches |Burkholderia xenovorans [TaxId: 266265]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.129