Protein Concepts Dictionary

Tableau information

Concept source:  d1fkna_  amino acid (a.a.) range (GLN163)(ASP378)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: HEEEEHHHEHEEEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLN163)  (ALA168) H1
	  (ALA168)  (GLY177) E2
	  (GLY178)  (SER182) E3
	  (SER187)  (PRO192) E4
	  (VAL204)  (ILE208) E5
	  (ASP216)  (TYR222) H6
	  (LYS238)  (SER252) H7
	  (ASP259)  (GLY264) H8
	  (GLU265)  (GLN271) E9
	  (PRO276)  (PRO281) H10
	  (VAL282)  (MET288) E11
	  (ASN293)  (LEU301) E12
	  (TYR305)  (GLU310) E13
	  (ASP318)  (ILE324) E14
	  (GLY334)  (GLU339) H15
	  (TYR342)  (ASP346) E16
	  (ARG351)  (VAL356) E17
	  (ALA368)  (PRO373) E18
	  (PHE374)  (ASP378) E19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                                   
E2      -49.6°   E2                                                                                                                            
E3       97.8° -136.7°   E3                                                                                                                     
E4     -108.0°  -60.7°  150.8°   E4                                                                                                              
E5      121.3°  161.8°   26.2° -130.7°   E5                                                                                                       
H6      -99.5° -111.5°  100.2°  -89.0°   84.6°   H6                                                                                                
H7       94.7°  134.0°   -3.1°  153.2°  -29.2° -101.2°   H7                                                                                         
H8      -35.9°  -39.1°  129.9°  -79.0°  145.6°  -78.2°  127.1°   H8                                                                                  
E9       78.3°  123.2°   21.0°  171.3°   43.3°  -96.0°   18.3° -109.0°   E9                                                                           
H10     -84.4°  -37.3° -133.5°   40.1° -138.8°  125.4°  133.0°  -74.2°  137.4°   H10                                                                   
E11     -54.9°  -12.3° -148.1°   53.2°  174.0° -100.5°  145.2°  -34.6° -132.2°  -39.7°   E11                                                            
E12     123.8°  165.7°   51.1° -119.0°  -29.9°   54.9°  -53.4°  127.0°  -59.4°  151.9°  155.4°   E12                                                     
E13     116.1° -143.3°   71.3° -107.7°  -52.7°   32.0°  -73.0°  107.1°  -73.9°  147.7° -132.4°   22.9°   E13                                              
E14     -82.1°  -32.9° -142.5°   35.1° -146.6°  116.9°  141.8°  -67.3°  144.1°   -9.1°   32.7° -152.6°  142.1°   E14                                       
H15      43.5°   88.1°  -54.3° -148.8°   78.8° -105.9°   51.3°  -77.6°   35.6° -112.7°  -96.6°   91.7°   98.7° -115.4°   H15                                
E16     -65.4°  -24.2° -160.6°  -42.7° -173.0°  -92.4°  157.7°  -38.8°  143.6°   40.0°   12.5° -145.9° -123.8°   31.4°  108.1°   E16                         
E17     102.8°  145.8°   10.1°  148.8°   18.8°   90.7°  -12.3°  131.3°   24.6° -142.0° -156.3°   41.1°   61.2° -151.1°   60.0°  168.1°   E17                  
E18     -57.8°   26.4° -116.7°   68.9°  137.1° -137.8°  114.7°  -62.9°  111.1°  -30.7°  -37.5°  167.0° -169.6°  -33.8°  -82.2°   46.9° -126.8°   E18           
E19    -107.4°  -59.1°  148.6°    4.9°  130.8°  -93.9°  150.7°  -80.3°  167.7°   35.8°  -52.5°  121.9° -111.9°   31.5° -146.4°  -42.9°  148.2°  -65.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2zhra_ :   (ASN162)  (ASP378)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
 d2qk5a_ :   (GLN224)  (ASP439)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
 d3kmxa_ :   (GLN224)  (PRO434)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
 d2qmda_ :   (ASN223)  (PRO434)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
 d1fkna_ :   (GLN163)  (ASP378)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]
 d1fknb_ :   (ASN162)  (ASP378)   [view usage] : b.50.1.2 |Acid proteases |Acid proteases |Pepsin-like |beta-secretase (memapsin) |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.50