Protein Concepts Dictionary

Tableau information

Concept source:  d3wdpp_  amino acid (a.a.) range (TYR11)(GLY297)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: EHHHEHEEHHEHHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TYR11)   (GLY15) E1
	   (SER29)   (ASP37) H2
	   (LYS38)   (GLY44) H3
	   (TYR61)   (GLY72) H4
	   (ASP74)   (GLY78) E5
	   (GLU81)   (PHE86) H6
	   (VAL95)  (ASP100) E7
	  (ILE106)  (PRO111) E8
	  (PRO111)  (ALA122) H9
	  (MET124)  (ARG140) H10
	  (LYS142)  (LEU148) E11
	  (PRO160)  (LYS165) H12
	  (LYS179)  (HIS194) H13
	  (ASP200)  (THR204) E14
	  (PRO208)  (ASN218) H15
	  (SER229)  (GLU253) H16
	  (SER258)  (PRO270) E17
	  (LYS276)  (GLU288) H18
	  (GLU288)  (GLY297) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                   
H2      -80.7°   H2                                                                                                                            
H3     -131.4°  -53.2°   H3                                                                                                                     
H4     -165.7°  101.7°   48.6°   H4                                                                                                              
E5      -23.4°   72.3°  114.4°  144.0°   E5                                                                                                       
H6       43.1° -116.0° -166.8° -140.8°  -63.8°   H6                                                                                                
E7     -110.1°  -89.1°   60.7°   56.2°  -87.8° -130.6°   E7                                                                                         
E8       68.5°  102.9° -130.3° -123.8°   91.7°   39.7°  167.3°   E8                                                                                  
H9       70.4°   31.7°  -75.7°  118.7°   75.0°   91.4° -120.7°  -71.2°   H9                                                                           
H10     171.1°   99.5°   52.1°  -23.1°  164.6° -131.3°   78.8° -103.0° -105.1°   H10                                                                   
E11     -39.5°   74.7°  105.6°  127.2°  -16.9°  -75.8°  -71.0°  107.8°   85.8°  149.2°   E11                                                            
H12      70.3°  -62.7°   74.9°   98.1°   46.9°  108.1°  -44.9°  138.0°   88.2° -117.8°   32.4°   H12                                                     
H13     120.2° -117.6°  -96.7°  -71.4°  143.5°   81.5°  125.4°  -52.4°  -96.1°  -51.8°  157.3° -169.5°   H13                                              
E14     -51.8°   61.7°   89.0°  116.8°  -28.6°  -91.5°  -62.6°  119.4°   79.6°  136.0°  -16.8°   18.7°  171.8°   E14                                       
H15     -54.9°   37.9°   77.4°  119.3°  -37.9°  -97.9°  -76.0°  111.0°   55.9°  129.5°  -36.8°  -33.5°  151.9°  -24.7°   H15                                
H16     106.3° -144.4° -119.8°  -80.1°  125.8°   63.3°  119.1°  -51.9° -116.7°  -68.4°  132.5°  152.8°  -28.8°  148.9°  160.6°   H16                         
E17    -108.8°   42.9°   26.1°   66.5°  -89.1° -151.9°  -49.6°  143.1°   73.4°   76.4°  -79.6°  -49.4°  122.8°  -62.9°  -53.9° -144.7°   E17                  
H18      53.6°  117.0° -157.2° -133.7°   75.7°   13.7°  142.0°   27.0°   88.2° -119.6°   88.9°  121.3°  -68.6°  104.1°  107.0°   53.7°  158.8°   H18           
H19      95.9°  176.0° -130.7°  -82.1°  105.2°   60.0°   94.0°  -73.8° -145.0°  -83.6°  104.0°  118.1°  -62.4°  117.7°  140.8°  -34.7° -140.9°  -59.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3wq8a_ :    (TYR11)  (GLY297)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
 d1qvba_ :    (TYR11)  (SER295)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |beta-Glycosidase |Thermosphaera aggregans [TaxId: 54254]
 d3apga_ :    (TYR11)  (GLY297)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Pyrococcus furiosus [TaxId: 2261]
 d3wdpp_ :    (TYR11)  (GLY297)   [view usage] : c.1.8.4 |TIM beta/alpha-barrel |(Trans)glycosidases |Family 1 of glycosyl hydrolase |automated matches |Pyrococcus furiosus [TaxId: 2261]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1