Protein Concepts Dictionary

Tableau information

Concept source:  d3vzya_  amino acid (a.a.) range (LYS8)(LYS226)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: EHEHEEHHHEHHEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS8)   (ASP14) E1
	   (GLN23)   (GLU29) H2
	   (ASP33)   (ASP41) E3
	   (THR44)   (VAL55) H4
	   (PRO61)   (SER67) E5
	   (ASP77)   (ASN86) E6
	   (ASN89)   (VAL94) H7
	   (VAL94)  (GLY105) H8
	  (GLY105)  (GLU111) H9
	  (GLU112)  (ASN122) E10
	  (LYS126)  (GLU132) H11
	  (MET139)  (GLN153) H12
	  (PRO155)  (GLU160) E13
	  (ILE168)  (LEU178) H14
	  (THR182)  (GLY187) E15
	  (ALA192)  (ALA202) H16
	  (ASP203)  (ASN209) E17
	  (ASN209)  (ASP214) H18
	  (ASP214)  (LYS226) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                   
H2     -156.1°   H2                                                                                                                            
E3      -34.5°  130.4°   E3                                                                                                                     
H4      137.0°  -61.3°  167.1°   H4                                                                                                              
E5      -51.7°  111.3°  -19.1°  170.9°   E5                                                                                                       
E6      -83.9°   87.5°  -49.8°  134.6°  -36.7°   E6                                                                                                
H7      131.1°  -56.5°  161.3°  -24.9°  156.5° -143.6°   H7                                                                                         
H8       75.0°  -99.6°  102.6°  -78.4°  109.0° -142.9°  -59.0°   H8                                                                                  
H9      146.8°  -56.7° -152.9°   22.8° -149.3° -112.8°  -45.1° -101.2°   H9                                                                           
E10     -79.7°  106.0°  -56.8°  117.9°  -57.5°  -36.9° -141.6°  153.9°   96.5°   E10                                                                   
H11      75.5°  -80.7°   64.6° -127.2°   52.8°  -72.1°  103.8°   73.2° -135.9° -106.4°   H11                                                            
H12      97.8°  -71.1°  114.6°  -72.7°  110.9°  130.2°  -48.0°  -29.9°  -92.4°  166.9°   60.6°   H12                                                     
E13     -57.7°  136.3°  -53.2°  115.3°  -65.6°  -64.6°  137.7°  123.2°  102.3°  -33.0° -117.5°  152.5°   E13                                              
H14     120.2°  -42.1°  119.2°  -72.8°  105.6°  106.6°  -51.4°  -61.7°  -83.7°  140.0°   54.6°  -31.8°  170.6°   H14                                       
E15     -49.9°  146.4°  -52.4°  115.1°  -67.6°  -72.7°  134.4°  112.6°  106.0°  -43.3° -116.7°  142.1°  -10.6°  170.0°   E15                                
H16     118.6°  -37.6°   99.7°  -93.3°   81.9°   75.6°  -77.7°  -88.0°  -93.9°  109.8°  -43.2°  -59.9°  140.1°  -31.0°  147.2°   H16                         
E17     -27.8°  176.1°  -52.8°  115.2°  -71.9°  -94.3°  121.3°   81.0°  119.4°  -73.6°  103.2°  110.1°  -42.4°  140.0°  -32.1°  146.3°   E17                  
H18     -76.4°  127.4°  -92.8°   74.3° -109.2° -107.0°   93.0°   97.4°   71.4°   70.4°  151.8° -121.9°   45.5° -143.9°   41.6° -165.0°   48.7°   H18           
H19     155.3°    5.3°  133.5°  -58.7°  114.4°   92.2°  -52.0°  -94.5°  -56.4°  111.3°  -80.1°  -66.2°  141.1°  -38.0°  151.0°  -37.5° -173.3°  127.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3vzya_ :     (LYS8)  (LYS226)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Bacillus subtilis [TaxId: 1423]
 d3w00b_ :     (LYS8)  (LYS226)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Bacillus subtilis [TaxId: 1423]
 d3vzxa_ :     (LYS8)  (LYS226)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Bacillus subtilis [TaxId: 1423]
 d3vzxb_ :     (LYS8)  (VAL225)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |PcrB protein homolog YerE |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1