Protein Concepts Dictionary

Tableau information

Concept source:  d1veoa2  amino acid (a.a.) range (LYS162)(LEU415)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: EEHHHHHHEHHHEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LYS162)  (GLY168) E1
	  (ARG189)  (ALA194) E2
	  (THR196)  (TYR211) H3
	  (LEU214)  (ALA220) H4
	  (SER227)  (PRO233) H5
	  (GLY237)  (ASN243) H6
	  (SER247)  (ALA275) H7
	  (PHE276)  (GLN281) H8
	  (VAL282)  (HIS292) E9
	  (ASN297)  (PRO301) H10
	  (HIS302)  (GLY309) H11
	  (TYR313)  (LYS324) H12
	  (ASP326)  (CYS331) E13
	  (PRO346)  (GLY361) H14
	  (VAL363)  (ASN368) E15
	  (ASN374)  (TYR388) H16
	  (ALA391)  (ARG397) E17
	  (ARG397)  (ASN405) H18
	  (ASN405)  (LEU415) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                   
E2       86.8°   E2                                                                                                                            
H3      -96.5°   74.9°   H3                                                                                                                     
H4      -97.6°  159.6°   84.8°   H4                                                                                                              
H5     -129.4°  141.3°  108.6°   44.6°   H5                                                                                                       
H6      115.1°  107.9°   37.4°   52.2°  -72.0°   H6                                                                                                
H7      143.0°   71.7°  106.0°  113.1°  -70.4° -100.3°   H7                                                                                         
H8      146.6°  125.6°  -99.7°   55.4°   17.2°  -66.4°   57.8°   H8                                                                                  
E9      -42.8° -129.1°  -99.5°  -55.7°  -89.0°  -91.9°  151.2°  105.3°   E9                                                                           
H10      90.8°   23.9°   50.9°  135.7° -139.0°   84.8°  -81.5° -122.0°  125.9°   H10                                                                   
H11      95.8°   16.4°   87.5°  165.2° -127.6°  115.8°   57.2°  113.9°  138.4°   37.6°   H11                                                            
H12     134.2°   52.5°   92.2°  128.0°  -88.9°   98.6°  -20.5°  -74.3°  168.1°   61.1°   39.7°   H12                                                     
E13     -64.1°  148.5° -117.9°  -45.9°  -65.4°  -95.8°  124.9°   82.5°  -26.9°  152.6°  148.0°  144.8°   E13                                              
H14     122.7°  -45.2°   49.7°  118.5° -106.7°   68.3°  -60.0°  -89.7°  148.3°  -32.3°  -47.9°  -43.0° -164.1°   H14                                       
E15     -66.5°  131.0° -144.6°  -68.2°  -67.8° -120.3°  105.5°   83.8°  -46.6°  151.1°  123.5°  122.2°  -27.1° -165.2°   E15                                
H16     103.0°  -52.0°   25.1°  107.7°  118.4°   56.2°  -87.3° -104.0°  120.9°  -28.6°  -62.9°  -70.1°  142.6°  -27.4°  167.2°   H16                         
E17     -64.6°  105.9° -160.8°  -93.9°  -83.0° -146.1°   92.2°   95.3°  -64.6°  128.4°   97.5°  103.5°  -52.2°  142.9°  -26.1°  156.7°   E17                  
H18     129.1° -137.7° -115.3°   50.9°   -7.5°  -79.1°  -66.0°   19.1°   91.2° -140.0° -122.8°  -85.4°   66.1° -108.0°   64.8° -122.8°   77.5°   H18           
H19     107.0°  -73.1°   11.0°   86.6°  103.0°   35.4°  -95.4°  -91.9°  109.2°  -49.6°  -83.6°  -82.6°  124.9°  -41.2°  151.9°  -21.1°  171.6° -109.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1veoa2 :   (LYS162)  (LEU415)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus cereus [TaxId: 1396]
 d1vepa2 :   (LYS162)  (LEU415)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |automated matches |Bacillus cereus [TaxId: 1396]
 d1itca2 :   (LYS162)  (LEU414)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial beta-amylase |Bacillus cereus [TaxId: 1396]
 d1b90a2 :   (LYS162)  (LEU414)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Bacterial beta-amylase |Bacillus cereus [TaxId: 1396]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1