Protein Concepts Dictionary

Tableau information

Concept source:  d2fw2b_  amino acid (a.a.) range (ASP5)(ARG218)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: EEHEHHEEHEEEHHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP5)   (GLU11) E1
	   (PHE14)   (SER20) E2
	   (GLU32)   (ALA46) H3
	   (LYS50)   (ALA56) E4
	   (ASP66)   (ASP77) H5
	   (ALA81)   (PHE99) H6
	  (PRO102)  (ASN108) E7
	  (GLY109)  (GLY113) E8
	  (GLY113)  (ASP123) H9
	  (ASP123)  (ASN128) E10
	  (ALA131)  (TYR137) E11
	  (GLY141)  (CYS147) E12
	  (CYS147)  (MET155) H13
	  (GLY157)  (GLY168) H14
	  (GLY168)  (THR172) E15
	  (THR172)  (GLY180) H16
	  (SER183)  (LEU187) E17
	  (THR192)  (SER204) H18
	  (ASN206)  (ARG218) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                   
E2      163.5°   E2                                                                                                                            
H3      -10.3°  171.6°   H3                                                                                                                     
E4      146.9°  -17.5°  156.9°   E4                                                                                                              
H5     -125.8°   70.0° -115.6°   87.2°   H5                                                                                                       
H6       14.3° -153.1°   23.5° -135.6° -136.1°   H6                                                                                                
E7      126.7°  -37.3°  136.6°  -20.3° -107.3° -116.2°   E7                                                                                         
E8     -118.8°   77.6° -109.9°   92.7°  -20.9° -124.3°  112.5°   E8                                                                                  
H9      -19.9°  175.4°  -12.9° -163.2°  107.8°  -28.4° -144.6°  -98.9°   H9                                                                           
E10     108.8°  -54.9°  118.5°  -38.4° -124.5°   99.4°  -18.3° -130.7° -127.6°   E10                                                                   
E11    -130.4°   66.1° -121.1°   81.7°  -16.6° -136.1°  101.8°  -11.8° -110.6°  120.1°   E11                                                            
E12     -15.4°  164.6°   -8.8° -155.8°  113.6°  -29.7° -136.3°  111.2°  -20.0°  118.0° -121.7°   E12                                                     
H13      55.5° -116.4°   63.6° -100.9° -141.8°   41.4°  -86.7° -120.8°   62.6°  -76.3° -127.4°   70.8°   H13                                              
H14     140.5°   32.7°  141.0°   40.2°  -72.1°  144.2°   49.2°  -89.1° -151.2°   58.9°  -77.8°  132.4°  135.0°   H14                                       
E15      38.8° -124.7°   48.1° -109.0°  158.8°   33.8°  -88.7°  157.5°   58.6°  -70.5°  169.2°   47.9°   50.3° -111.3°   E15                                
H16     -60.5°  135.3°  -52.9°  145.9°   72.1°  -65.6°  156.7°   58.9°  -40.7° -157.1°   70.8°  -57.2°   81.3° -142.8°  -98.6°   H16                         
E17      97.4°  -66.2°  106.3°  -51.7° -131.7°   90.8°  -33.0° -143.8°  117.2°  -16.7° -132.1°  104.1°  -78.1°   60.2°  -58.6° -156.1°   E17                  
H18     -47.5°  148.4°  -37.5°  165.6°   78.4°   58.3°  174.0°  -73.4°   30.0°  155.8°  -84.1°   37.8°   89.7° -133.4°   85.3°   26.0°  141.4°   H18           
H19     131.6°   60.1° -128.2°   68.0°  -51.3°  126.1°   83.8°  -37.5°  115.3°  100.0°  -34.9° -134.5°   97.1°  -87.7°  147.0°   77.9° -116.4°  101.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2fw2e_ :     (ASP5)  (ARG218)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Chromodomain protein CDY2A |Human (Homo sapiens) [TaxId: 9606]
 d2fw2b_ :     (ASP5)  (ARG218)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Chromodomain protein CDY2A |Human (Homo sapiens) [TaxId: 9606]
 d2gtrc_ :     (ASP6)  (VAL218)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2fw2d_ :     (ASP5)  (VAL217)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Chromodomain protein CDY2A |Human (Homo sapiens) [TaxId: 9606]
 d1k39b_ :    (LYS10)  (HIS240)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1k39a_ :    (LYS10)  (HIS240)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2gtra_ :     (ASP6)  (VAL218)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1k39c_ :    (LYS10)  (HIS240)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.14