Protein Concepts Dictionary

Tableau information

Concept source:  d3q4ud_  amino acid (a.a.) range (GLY220)(ASP499)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: EEHEEHHEEEEEEHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (GLY220)  (GLN228) E1
	  (VAL232)  (SER238) E2
	  (GLU242)  (MET256) H3
	  (ALA267)  (SER272) E4
	  (SER275)  (LEU281) E5
	  (SER290)  (GLN296) H6
	  (VAL303)  (HIS320) H7
	  (HIS320)  (GLY325) E8
	  (ALA331)  (ASP336) E9
	  (ILE342)  (LYS346) E10
	  (GLN349)  (LEU355) E11
	  (LEU357)  (SER362) E12
	  (ASN366)  (GLY371) E13
	  (ALA383)  (GLU389) H14
	  (ASP397)  (MET418) H15
	  (SER440)  (GLN452) H16
	  (PRO458)  (ASP464) H17
	  (ASP464)  (TRP478) H18
	  (THR487)  (ASP499) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                   
E2      145.8°   E2                                                                                                                            
H3      -43.0° -139.9°   H3                                                                                                                     
E4      121.5°  -27.2° -140.6°   E4                                                                                                              
E5      -66.1°  144.7°   42.3° -171.9°   E5                                                                                                       
H6      -91.6°  115.3°  -99.5°  118.8°  -61.4°   H6                                                                                                
H7       96.4°  -58.2°   85.1°  -58.2°  120.3° -171.7°   H7                                                                                         
E8       42.0° -113.9°   38.5° -103.2°   80.6°  130.6°  -56.5°   E8                                                                                  
E9     -114.1°   72.2° -147.9°   66.3° -114.3°  -52.9°  124.5°  146.2°   E9                                                                           
E10     -32.0°  161.1°  -56.1°  135.9°  -51.9°   59.7°  128.3°   72.5°   92.7°   E10                                                                   
E11     118.0°  -28.2°  121.8°  -21.5°  154.8° -138.7°  -37.2°  -88.0°   87.4°  144.3°   E11                                                            
E12      73.5° -104.5°   36.0° -114.7°   63.3°  124.1°  -57.0°  -42.9°  170.9°  -92.1°  -93.2°   E12                                                     
E13      95.3°   74.8°  138.0°   56.0° -128.7°  -72.5°  108.6°  117.8°  -29.0°   86.5°   76.5°  159.3°   E13                                              
H14     130.0°  -17.5°  141.2°   -9.8°  162.1° -119.3°   56.3°  106.6°  -68.8° -145.6°   19.4°  110.6°  -63.0°   H14                                       
H15     -77.3°  123.9°  -95.2°  118.3°  -64.6°   17.4°  170.0°  118.7°   53.4°  -46.2°  139.8° -126.9°   64.7° -122.1°   H15                                
H16    -103.2° -104.2°   65.1° -131.3°   40.6°   74.7° -101.4°  -97.2°  114.0°   92.3° -120.3°  -58.1°  142.6° -121.5°   87.8°   H16                         
H17      52.0° -140.8°   12.7° -150.2°   31.0°   91.0°  -92.3°   50.7°  143.1°   57.5° -129.5°  -37.6°  143.7° -148.0°   89.9°  -53.2°   H17                  
H18     120.7°  -31.5°  110.3°  -38.0°  137.2° -146.5°   26.6°   82.9° -101.1°  152.1°  -17.8°   77.9°  -93.9°  -32.7° -154.5° -103.8° -115.3°   H18           
H19     -65.0°  144.9°  -70.9°  143.9°  -39.6°   29.8° -156.0° -101.1°   78.7°  -34.1°  165.3° -101.3°   89.1° -147.4°  -25.6°   70.4°   64.5°  173.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3q4ud_ :   (GLY220)  (ASP499)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1b6cb_ :   (GLY217)  (GLU499)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Type I TGF-beta receptor R4 |Human (Homo sapiens) [TaxId: 9606]
 d3ooma_ :   (GLY220)  (ILE498)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1py5a_ :   (GLY217)  (GLY500)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Type I TGF-beta receptor R4 |Human (Homo sapiens) [TaxId: 9606]
 d4dyma_ :   (GLY220)  (ILE498)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3q4uc_ :   (GLY220)  (ILE498)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3mtfa_ :   (GLY220)  (ILE498)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3mtfb_ :   (GLY220)  (ILE498)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2wota_ :   (GLY217)  (GLN498)   [view usage] : d.144.1.7 |Protein kinase-like (PK-like) |Protein kinase-like (PK-like) |Protein kinases, catalytic subunit |Type I TGF-beta receptor R4 |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.144