Protein Concepts Dictionary

Tableau information

Concept source:  d3lb0a_  amino acid (a.a.) range (LYS2)(GLN251)

nSSEs in this Concept: 19

String of secondary struct.elems. (SSEs) defining this concept: EEEHEHHEHEHEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS2)    (ARG7) E1
	    (ASP8)   (GLY12) E2
	   (ILE18)   (GLY24) E3
	   (THR26)   (ARG38) H4
	   (ASP43)   (VAL49) E5
	   (PHE52)   (THR57) H6
	   (THR57)   (THR73) H7
	   (PRO76)   (PHE81) E8
	   (THR93)  (SER107) H9
	  (ASP111)  (GLU116) E10
	  (ASP121)  (ASN135) H11
	  (ALA137)  (HIS146) E12
	  (ALA150)  (GLY165) H13
	  (ILE168)  (MET174) E14
	  (ALA179)  (TYR195) H15
	  (ARG198)  (SER204) E16
	  (SER206)  (GLY216) H17
	  (THR224)  (LYS229) E18
	  (SER238)  (GLN251) H19

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                                   
E2      157.8°   E2                                                                                                                            
E3       51.8° -113.5°   E3                                                                                                                     
H4     -105.7°   82.2°  152.7°   H4                                                                                                              
E5       80.9°  -88.2°  -30.0°  168.3°   E5                                                                                                       
H6       84.7° -108.3°   73.9° -124.0°  -65.5°   H6                                                                                                
H7      -88.6°   96.9°  135.9°  -17.5°  163.0° -127.0°   H7                                                                                         
E8      100.9°  -66.1°  -49.2°  147.0°  -22.2°  -77.3°  155.0°   E8                                                                                  
H9       61.2° -133.8°  112.1°  -52.9°  137.7°   91.3°  -41.7°  159.9°   H9                                                                           
E10    -132.6°   31.8°  -82.4°  113.5°  -56.4°  -94.1°  126.5°  -34.3° -165.5°   E10                                                                   
H11      53.6° -141.0°  104.5°  -59.3°  130.8°   90.1°  -46.7°  152.9°   -7.7° -172.8°   H11                                                            
E12    -113.7°   44.1°  -79.2°  101.0°  -67.3° -125.2°  105.5°  -49.5°  143.4°  -34.8°  143.2°   E12                                                     
H13      55.0° -144.4°   77.1° -103.5°   88.2°   39.5°  -96.7°  107.7°  -55.5°  132.8°  -52.4°  155.1°   H13                                              
E14    -103.2°   54.7°  -75.1°   99.4°  -69.4° -132.3°  100.4°  -55.0°  134.1°  -46.3°  132.6°  -12.0°  151.9°   E14                                       
H15      91.7° -110.3°  113.7°  -78.2°  111.6°   46.1°  -81.8°  120.5°  -55.7°  120.8°  -58.9°  153.4°  -40.2°  164.9°   H15                                
E16     -92.6°   65.4°  -68.3°  101.7°  -67.9° -133.2°   99.5°  -57.4°  127.8°  -55.1°  124.9°  -22.2°  143.2°  -10.7°  175.6°   E16                         
H17     -86.7°  114.0°  128.0°  -54.2°  136.9°   72.3°  -54.8°  147.8°  -32.8°  137.9°  -38.6°  152.6°  -51.9°  153.6°  -27.4°  154.3°   H17                  
E18      37.6°  120.4°  -43.1°  110.0°  -69.3°  110.3°   94.3°  -80.2°   88.6° -102.0°   81.9°  -76.4°   91.1°  -65.7°  129.3°  -55.0° -120.0°   E18           
H19    -132.1°   66.5°  167.1°  -39.0°  140.9°  -93.7°  -54.9°  125.5°  -70.9°   95.3°  -78.6°  106.1°  -95.7°  112.3°  -56.7°  120.6°  -48.1° -149.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3o1na_ :     (MET1)  (GLN251)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
 d4iuoa_ :     (LYS2)  (GLN251)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
 d3nnta_ :     (LYS2)  (GLN251)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
 d3m7wd_ :     (MET1)  (GLN251)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |automated matches |Salmonella enterica [TaxId: 99287]
 d3lb0a_ :     (LYS2)  (GLN251)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Salmonella enterica [TaxId: 99287]
 d4clmb_ :     (LYS2)  (ASN251)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Type I 3-dehydroquinate dehydratase |Salmonella enterica [TaxId: 90370]
 d2yr1a_ :     (PRO5)  (ARG257)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d4h3db_ :     (LYS2)  (ILE254)   [view usage] : c.1.10.0 |TIM beta/alpha-barrel |Aldolase |automated matches |automated matches |Clostridium difficile [TaxId: 272563]
 d1gqna_ :     (MET1)  (ASN251)   [view usage] : c.1.10.1 |TIM beta/alpha-barrel |Aldolase |Class I aldolase |Type I 3-dehydroquinate dehydratase |Salmonella typhi [TaxId: 90370]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1