Protein Concepts Dictionary

Tableau information

Concept source:  d4geka_  amino acid (a.a.) range (ASP21)(LYS242)

nSSEs in this Concept: 18

String of secondary struct.elems. (SSEs) defining this concept: HHHEHEHEEHHEHHHEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ASP21)   (VAL27) H1
	   (PHE28)   (ARG34) H2
	   (TYR39)   (VAL54) H3
	   (GLY57)   (LEU63) E4
	   (GLY68)   (ILE78) H5
	   (ASN82)   (ILE88) E6
	   (PRO92)  (TYR105) H7
	  (THR109)  (GLU115) E8
	  (SER127)  (PHE133) E9
	  (THR134)  (GLU139) H10
	  (GLN144)  (LEU154) H11
	  (GLY158)  (GLU164) E12
	  (ALA171)  (GLY189) H13
	  (SER196)  (MET206) H14
	  (SER210)  (GLY222) H15
	  (GLU224)  (LEU228) E16
	  (TRP229)  (PHE233) E17
	  (GLY236)  (LYS242) E18

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                            
H2       65.0°   H2                                                                                                                     
H3      -81.3°  105.0°   H3                                                                                                              
E4      115.5°   73.7°  159.0°   E4                                                                                                       
H5      -42.8°  -91.2°  -39.7°  158.2°   H5                                                                                                
E6      130.0°   81.2°  145.5°  -14.7°  171.9°   E6                                                                                         
H7      -33.1°  -96.5°  -61.6°  139.2°  -25.1°  152.6°   H7                                                                                  
E8      150.8°   93.3°  125.0°  -36.0°  164.7°  -21.3° -166.0°   E8                                                                           
E9      107.1°   75.5°  170.6°  -11.8°  149.3°  -25.2°  127.8°  -45.9°   E9                                                                    
H10     159.9°   95.1°  102.5°   57.4° -141.6°   43.1° -162.3°   23.3°   68.2°   H10                                                            
H11     -55.4° -105.0°  -32.1° -168.9°  -14.5°  173.7°  -29.7°  153.7° -157.3°  133.5°   H11                                                     
E12     104.8°   74.4° -172.7°  -13.7°  147.0°  -27.4°  125.7°  -48.1°   -2.3°  -70.4°  155.2°   E12                                              
H13      78.1°  129.9° -101.3°  -94.9°   82.7°  -99.9°   60.7° -105.3°  -85.0° -119.8°   77.4°  -84.2°   H13                                       
H14    -100.6°  -60.7°   63.4°   99.5°  -86.0°   92.8° -110.0°   83.5° -109.9°   64.8°  -89.1° -110.8°  164.5°   H14                                
H15    -100.3° -116.9°  -19.5°  143.0°  -58.0°  128.3°  -77.1°  107.1°  152.6°   85.8°  -47.7°  154.9° -101.6°   63.3°   H15                         
E16      76.1°  -78.8°  152.8°  -48.2°  114.4°  -61.4°   91.3°  -80.9°  -36.6° -104.0°  120.7°  -34.5°   59.6° -135.5°  161.1°   E16                  
E17     104.7°   77.9° -174.1°  -16.5°  146.1°  -29.1°  123.6°  -49.2°   -4.9°  -72.0°  152.7°   -4.1°   80.2° -114.7°  154.7°  -32.3°   E17           
E18     -91.7° -103.0°  -12.8°  146.1°  -51.7°  132.9°  -74.3°  113.1°  157.8°   90.1°  -44.9°  159.8° -111.0°   53.5°  -14.3°  165.6° -162.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4geka_ :    (ASP21)  (LYS242)   [view usage] : c.66.1.14 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical protein HI0319 (YecO) |automated matches |Escherichia coli [TaxId: 511145]
 d1im8b_ :    (GLU21)  (LYS241)   [view usage] : c.66.1.14 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical protein HI0319 (YecO) |Hypothetical protein HI0319 (YecO) |Haemophilus influenzae [TaxId: 727]
 d1im8a_ :    (ASP20)  (LYS241)   [view usage] : c.66.1.14 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical protein HI0319 (YecO) |Hypothetical protein HI0319 (YecO) |Haemophilus influenzae [TaxId: 727]
 d4iwnb_ :    (PHE20)  (LYS242)   [view usage] : c.66.1.14 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical protein HI0319 (YecO) |automated matches |Escherichia coli [TaxId: 562]
 d4gekg_ :    (ASP21)  (LYS242)   [view usage] : c.66.1.14 |S-adenosyl-L-methionine-dependent methyltransferases |S-adenosyl-L-methionine-dependent methyltransferases |Hypothetical protein HI0319 (YecO) |automated matches |Escherichia coli [TaxId: 511145]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.66