Protein Concepts Dictionary

Tableau information

Concept source:  d3ne6a2  amino acid (a.a.) range (ALA629)(LYS888)

nSSEs in this Concept: 18

String of secondary struct.elems. (SSEs) defining this concept: HHEEEEEHHHHEHHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ALA629)  (LYS635) H1
	  (ASN645)  (ASN675) H2
	  (MET681)  (ARG685) E3
	  (GLU686)  (PRO691) E4
	  (GLY699)  (GLY704) E5
	  (ARG707)  (ASN711) E6
	  (PRO723)  (GLY729) E7
	  (PRO738)  (MET752) H8
	  (MET752)  (GLY756) H9
	  (GLU757)  (GLU770) H10
	  (ASN775)  (ALA780) H11
	  (ALA780)  (SER784) E12
	  (ASN787)  (ASP792) H13
	  (PRO802)  (ILE815) H14
	  (TYR831)  (GLU837) E15
	  (LYS844)  (PRO849) E16
	  (THR855)  (TRP865) H17
	  (ASP867)  (LYS888) H18

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                            
H2      130.5°   H2                                                                                                                     
E3      -51.2°  169.5°   E3                                                                                                              
E4      -66.3°  141.1°  -28.5°   E4                                                                                                       
E5     -158.4°  -37.5°  136.2° -112.1°   E5                                                                                                
E6       22.4° -137.5°   49.2°   73.3° -174.6°   E6                                                                                         
E7     -157.2°   41.3° -132.0° -107.7°    4.5°  178.8°   E7                                                                                  
H8      -35.3°  101.0°  -76.1°  -75.5°  123.3°  -56.5°  122.8°   H8                                                                           
H9      -30.7°  135.3°  -39.1°   39.7°  136.2°  -47.7°  132.6°  -38.3°   H9                                                                    
H10     132.4°  -95.9°   85.3°   84.8°  -66.7°  115.4°  -65.6°  160.1°  122.0°   H10                                                            
H11    -104.3°   32.7° -140.1° -118.8°  -56.4°  120.9°   58.0°  -70.5° -102.6° -123.0°   H11                                                     
E12     127.0°  -17.7°  172.8° -158.5°  -48.6°  125.9°  -53.0° -105.8° -143.9°  -93.5°  -45.7°   E12                                              
H13    -119.0°   91.4°  -80.1°  -55.3°   57.1° -128.4°   52.6°  108.6°  -88.5°  -60.3°   90.1°  105.4°   H13                                       
H14     113.7° -111.5°   72.4°   80.9°   86.5°   95.2°  -85.7°  147.3°  111.5°   20.4° -141.9° -104.4°  -74.6°   H14                                
E15    -100.3°  107.6°  -63.0°  -36.6°   75.5° -109.9°   71.0°   95.4°  -70.2°  -69.4°   98.5°  123.1°   18.9°   78.1°   E15                         
E16      85.7°  -82.9°  107.5°  135.9° -106.1°   69.2° -110.3° -101.2°  115.9°   91.1° -100.1°  -65.4° -150.2°  -80.4°  158.3°   E16                  
H17     -59.2°  107.7°  -63.4°  -45.0°  103.5°  -79.8°  100.4°  -41.5°  -33.3° -122.8°   77.1°  122.7°   67.6°  125.1°   54.0° -141.9°   H17           
H18     -54.3°   77.5° -100.9°  -99.5°  106.8°  -71.0°  108.0°  -25.2°  -63.5°  173.3°   50.4°   80.7°  117.9° -165.2°  111.0°  -89.5°  -59.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3qesa2 :   (ALA629)  (LYS874)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4ki4a2 :   (GLY637)  (TRP865)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3ne6a2 :   (ALA629)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3spza2 :   (ALA629)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3rmbd2 :   (ASN645)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d4j2ea2 :   (GLY637)  (LYS874)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3lzia2 :   (ALA629)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3sjja2 :   (GLY637)  (LYS874)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3qeta2 :   (GLY637)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3cq8a2 :   (ALA629)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]
 d3spya2 :   (ALA629)  (LYS888)   [view usage] : e.8.1.1 |DNA/RNA polymerases |DNA/RNA polymerases |DNA polymerase I |Family B DNA polymerase |Bacteriophage RB69 [TaxId: 12353]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.8