Protein Concepts Dictionary

Tableau information

Concept source:  d1v6ya_  amino acid (a.a.) range (SER28)(TRP275)

nSSEs in this Concept: 18

String of secondary struct.elems. (SSEs) defining this concept: HEHHEHHEHHEHEHEEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER28)   (PHE38) H1
	   (ASN39)   (ALA43) E2
	   (ALA43)   (LYS48) H3
	   (SER62)   (GLY75) H4
	   (GLN77)   (THR82) E5
	   (PRO90)   (LEU96) H6
	   (SER99)  (TYR116) H7
	  (ALA121)  (VAL126) E8
	  (SER141)  (THR146) H9
	  (ASP149)  (ALA161) H10
	  (LEU167)  (TYR172) E11
	  (TRP179)  (ARG195) H12
	  (ASP200)  (SER206) E13
	  (ASP216)  (ASP226) H14
	  (VAL229)  (ILE233) E15
	  (LEU236)  (ARG241) E16
	  (ALA246)  (VAL266) H17
	  (GLY271)  (TRP275) E18

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                            
E2      127.9°   E2                                                                                                                     
H3      -90.2°  -42.7°   H3                                                                                                              
H4      -56.6°  175.3° -140.1°   H4                                                                                                       
E5      110.9°  -23.5°  -45.0°  160.3°   E5                                                                                                
H6       65.7°  -68.2°   56.0° -116.4°  -46.4°   H6                                                                                         
H7      -78.4°  142.7°  127.5°  -33.5°  166.1° -144.1°   H7                                                                                  
E8      109.6°  -43.3°  -68.7°  138.8°  -24.9°  -46.3°  162.8°   E8                                                                           
H9      -47.8°   82.2°   42.4° -101.8°   72.8°   45.1° -109.3°  -86.6°   H9                                                                    
H10     -78.9°  120.5°   98.1°  -57.4°  139.6°  134.2°  -29.6°  163.8°   89.6°   H10                                                            
E11     123.1°  -76.8° -115.6°  102.0°  -71.0°  -87.3°  113.3°  -49.5° -132.4°  137.8°   E11                                                     
H12     -51.4°  101.3°   60.2°  -80.6°  103.8°   84.0°  -73.5°  123.5°   39.0°  -50.6°  171.2°   H12                                              
E13     133.0°  -82.8° -125.2°   94.7°  -83.9° -106.6°   97.3°  -66.0° -151.5°  118.9°  -19.4°  169.4°   E13                                       
H14     -62.6°   81.0°   39.4° -101.2°   83.2°   71.8°  -92.6°  104.6°   29.1°  -66.3°  154.0°  -20.9°  163.0°   H14                                
E15     143.2°  -85.7° -126.3°   90.4°  -95.5° -128.1°   81.3°  -83.7° -167.8°   97.7°  -42.1°  146.7°  -23.1°  149.0°   E15                         
E16     133.4°  -69.1° -110.1°  109.1°  -67.0°  -91.0°  114.7°  -48.7° -134.9°  134.8°  -10.5°  170.3°  -17.4°  149.5°  -37.1°   E16                  
H17     -35.3°  103.7°   61.1°  -79.5°   98.0°   67.5°  -83.8°  111.7°   25.6°  -66.8°  151.7°  -20.0°  167.9°  -27.4° -164.4°  158.3°   H17           
E18     166.5°  -43.9°  -85.2°  132.0°  -57.5° -101.4°  114.4°  -56.9°  126.1°  114.3°  -49.3°  134.3°  -44.4°  118.7°  -41.8°  -38.7°  145.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1nq6a_ :    (ALA27)  (TRP268)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces halstedii [TaxId: 1944]
 d2d1za1 :    (SER28)  (TRP266)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Streptomyces olivaceoviridis [TaxId: 1921]
 d1v6ya_ :    (SER28)  (TRP275)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces olivaceoviridis [TaxId: 1921]
 d1v0ma_ :    (THR31)  (TRP266)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
 d1od8a_ :    (THR31)  (TRP266)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces lividans [TaxId: 1916]
 d3u7bb_ :    (GLN27)  (TRP285)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Fungus (Fusarium oxysporum) [TaxId: 5507]
 d1xyza_ :   (PRO543)  (TRP795)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase |Clostridium thermocellum, XynZ [TaxId: 1515]
 d2hisa_ :    (ALA27)  (TRP273)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Cellulomonas fimi [TaxId: 1708]
 d1expa_ :    (ALA27)  (TRP273)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Cellulomonas fimi [TaxId: 1708]
 d1isva2 :    (SER28)  (TRP266)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |Xylanase A, catalytic core |Streptomyces olivaceoviridis [TaxId: 1921]
 d3nj3a_ :    (ASP46)  (PHE296)   [view usage] : c.1.8.3 |TIM beta/alpha-barrel |(Trans)glycosidases |beta-glycanases |automated matches |Thermotoga petrophila [TaxId: 390874]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1