Protein Concepts Dictionary

Tableau information

Concept source:  d3f99a_  amino acid (a.a.) range (SER187)(GLY462)

nSSEs in this Concept: 18

String of secondary struct.elems. (SSEs) defining this concept: HEEHEHEEEEEHHEHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (SER187)  (LEU208) H1
	  (TYR248)  (GLY252) E2
	  (ARG255)  (GLN260) E3
	  (LEU267)  (ARG278) H4
	  (PRO280)  (ALA286) E5
	  (SER287)  (ASN293) H6
	  (GLN304)  (GLY309) E7
	  (THR312)  (MET317) E8
	  (GLN319)  (GLY324) E9
	  (ILE327)  (ALA339) E10
	  (THR343)  (VAL351) E11
	  (SER361)  (GLY387) H12
	  (ASP393)  (ARG398) H13
	  (PRO399)  (ARG404) E14
	  (GLY408)  (ASP421) H15
	  (SER428)  (ASN441) H16
	  (ASN441)  (GLN446) H17
	  (LYS447)  (GLY462) H18

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                            
E2      149.5°   E2                                                                                                                     
E3      -65.1°  132.6°   E3                                                                                                              
H4      121.4°  -45.3° -171.0°   H4                                                                                                       
E5      -93.4°   99.3°  -33.4°  143.6°   E5                                                                                                
H6      -19.4°  158.4°   45.7° -140.6°   75.1°   H6                                                                                         
E7       28.8° -120.9°   88.7°  -99.4°  108.9°   45.8°   E7                                                                                  
E8     -163.4°   45.9°  -99.3°   73.5°  -73.8° -144.6°  166.2°   E8                                                                           
E9     -124.1°   51.1°  -84.1°   95.9°  -51.8°  114.2°  114.8°  -55.6°   E9                                                                    
E10      31.9° -130.9°   94.1°  -91.0°  124.9°   49.8°  -31.1°  156.5°  145.8°   E10                                                            
E11    -128.6°   63.2°  -69.6°  106.7°  -37.0°  111.6°  133.7°  -42.2°  -26.7°  160.4°   E11                                                     
H12      61.7° -108.7°  118.7°  -64.1°  152.0°  -78.3°  -55.3°  127.6°  152.5°  -30.0°  169.6°   H12                                              
H13    -115.0°   93.8°  -55.9° -115.3°   47.7°  -97.2°  142.9°  -48.6°  -75.6°  130.5°   49.0°  129.0°   H13                                       
E14     -78.2°  114.2°  -19.3° -159.1°  -15.5°   59.7°   96.3°  -88.1°  -64.8°  109.5°  -52.4°  136.8°  -54.2°   E14                                
H15     124.3°  -41.9°  169.8°    3.4°  140.3° -143.5° -101.4°   71.0°   92.5°  -94.1°  103.4°  -67.5°  113.9°  155.7°   H15                         
H16     -15.6°  164.9°  -56.4°  128.2°  -88.2°  -15.4°   44.0° -149.2° -129.5°   37.7° -125.1°   64.3° -100.9°  -72.7°  131.4°   H16                  
H17    -145.9°  -64.3°   86.4°  -85.3°   67.9°  128.9°  174.6°  -18.7°  -67.0°  147.1°   46.1°  125.6°   31.7°   79.8°  -83.4°  130.8°   H17           
H18     132.9°  -35.8°  161.4°  -11.5°  132.4° -152.1° -109.9°   62.3°   87.0° -102.5°   95.5°  -75.0°  106.0°  147.9°   -8.7°  139.3°   75.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3bm8a_ :   (GLY190)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
 d1lyva_ :   (GLU192)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
 d1qz0a_ :   (PRO191)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
 d1ytna_ :   (GLY190)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
 d1ytsa_ :   (GLU192)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
 d1ypta_ :   (ALA193)  (GLN446)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 630]
 d3u96a_ :   (PRO191)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |automated matches |Yersinia enterocolitica [TaxId: 630]
 d3f99a_ :   (SER187)  (GLY462)   [view usage] : c.45.1.2 |(Phosphotyrosine protein) phosphatases II |(Phosphotyrosine protein) phosphatases II |Higher-molecular-weight phosphotyrosine protein phosphatases |Protein-tyrosine phosphatase YopH, catalytic domain |Yersinia enterocolitica [TaxId: 34055]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.45