Protein Concepts Dictionary

Tableau information

Concept source:  d3uy6a_  amino acid (a.a.) range (GLY31)(ASP230)

nSSEs in this Concept: 18

String of secondary struct.elems. (SSEs) defining this concept: EEHHEHEHHHEEHHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (GLY31)   (SER37) E1
	   (ASP41)   (ASN47) E2
	   (ASN47)   (LYS53) H3
	   (PRO57)   (ARG72) H4
	   (SER80)   (HIS86) E5
	   (PHE91)   (LYS96) H6
	   (LYS96)  (LEU100) E7
	  (LEU100)  (ASN106) H8
	  (VAL109)  (ILE119) H9
	  (LYS121)  (ASN132) H10
	  (LYS136)  (SER140) E11
	  (SER149)  (SER153) E12
	  (SER153)  (GLN167) H13
	  (LYS173)  (LEU183) H14
	  (ILE185)  (GLU189) E15
	  (TYR191)  (ASN203) E16
	  (ASN207)  (ASN218) E17
	  (ASP220)  (ASP230) E18

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                            
E2      168.4°   E2                                                                                                                     
H3      -91.8°   98.8°   H3                                                                                                              
H4       40.6° -149.5°  -51.1°   H4                                                                                                       
E5     -157.1°  -29.1°   72.0°  120.9°   E5                                                                                                
H6       56.2° -134.7°  -36.0°   16.3° -107.6°   H6                                                                                         
E7       46.8° -130.9° -113.0°  -74.2°  154.6°  -82.8°   E7                                                                                  
H8     -139.4°   32.7°  126.6°  169.4°   61.7° -157.0°  -99.7°   H8                                                                           
H9       69.2° -120.8°  -57.9°   52.1°  112.3°  -44.9°  -58.6° -117.4°   H9                                                                    
H10      72.4°  -98.6° -157.8°  111.8° -127.3°  124.7°   44.8°  -67.0°  101.0°   H10                                                            
E11    -131.0°   57.5°  -43.7°  -92.1°   28.9°  -78.8° -151.9°   89.5°  -93.5°  156.1°   E11                                                     
E12      61.2° -107.8° -152.8°  101.8° -132.5°  117.4°   51.6°  -80.3°  110.0°   20.9° -156.4°   E12                                              
H13     -26.7°  158.5°  -68.3°   20.1°  130.9°   36.1°  -70.6° -165.0°   68.1°   98.6° -104.4°   84.7°   H13                                       
H14    -131.8°   38.0°  116.4°  143.4°  -50.2°  143.5° -130.5°  -46.9° -158.8°  -85.8°   74.3°  -83.3° -131.2°   H14                                
E15     -44.4°  124.0° -132.4°  -83.1° -140.7°   99.3°   55.1° -100.8°  107.0°   41.6° -149.1°   22.0°  -64.4°  -91.5°   E15                         
E16     156.6°  -34.8°   70.4°  119.9°   30.3° -103.6° -125.6°   56.3°  -88.1° -119.5°   41.6° -136.3°  138.6°   71.2°  156.9°   E16                  
E17     -18.8°  149.8° -106.0°   56.0° -152.3°   72.2°   52.5° -127.3°   87.4°   62.7° -137.5°   47.0°  -37.7° -113.3°  -27.1°  175.4°   E17           
E18     173.2°  -18.0°   84.0° -135.0°   24.5° -118.9° -130.4°   43.4° -104.0° -110.0°   47.4° -123.1°  151.3°   55.0°  141.4°  -16.8°  167.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1xkzc_ :   (GLY361)  (ASP560)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Regulatory protein BlaR1 |Staphylococcus aureus [TaxId: 1280]
 d3uy6a_ :    (GLY31)  (ASP230)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Staphylococcus aureus [TaxId: 1280]
 d1xa1b_ :    (GLY31)  (ASP230)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Regulatory protein BlaR1 |Staphylococcus aureus [TaxId: 1280]
 d1xkzb_ :   (SER362)  (ASN548)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Regulatory protein BlaR1 |Staphylococcus aureus [TaxId: 1280]
 d3q7va_ :    (SER32)  (ASP230)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Staphylococcus aureus [TaxId: 1280]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3