Protein Concepts Dictionary

Tableau information

Concept source:  d3q0jf_  amino acid (a.a.) range (THR5)(GLU237)

nSSEs in this Concept: 18

String of secondary struct.elems. (SSEs) defining this concept: EEHEHHEHEEHHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (THR5)   (ASP11) E1
	   (ARG13)   (LEU19) E2
	   (ASN29)   (ASP46) H3
	   (GLY50)   (THR55) E4
	   (ILE67)   (LEU73) H5
	   (THR74)   (VAL93) H6
	   (PRO96)  (ALA102) E7
	  (GLY109)  (MET115) H8
	  (ASP117)  (ASP123) E9
	  (THR124)  (GLY128) E10
	  (GLY141)  (ALA149) H11
	  (LYS152)  (GLY162) H12
	  (ARG163)  (ALA167) E13
	  (ALA167)  (SER173) H14
	  (SER177)  (PRO181) E15
	  (LEU185)  (MET199) H16
	  (SER200)  (SER217) H17
	  (SER218)  (GLU237) H18

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                            
E2      162.9°   E2                                                                                                                     
H3      -17.4°  178.9°   H3                                                                                                              
E4      141.0°  -21.8°  158.4°   E4                                                                                                       
H5     -132.4°   64.1° -115.9°  -85.3°   H5                                                                                                
H6        8.3° -154.7°   25.6° -132.9° -139.4°   H6                                                                                         
E7      120.7°  -42.2°  137.9°  -20.7° -106.0°  112.8°   E7                                                                                  
H8      -27.3°  167.8°  -12.8° -164.2°  105.2°  -34.5° -146.7°   H8                                                                           
E9      103.4°  -59.5°  120.6°  -37.9° -123.1°   95.6°  -17.3° -129.7°   E9                                                                    
E10    -127.4°   68.0° -112.2°   87.8°   10.7° -133.2°  108.2° -100.4° -124.4°   E10                                                            
H11      47.7° -121.1°   59.8° -104.2° -129.4°  -41.6°  -90.9°   60.0°  -77.6° -118.7°   H11                                                     
H12     140.5°   36.6°  142.3°   43.1°  -75.9°  139.0°   51.6° -150.3°   64.1°  -84.9°  141.7°   H12                                              
E13      17.7° -149.9°   29.8° -130.4°  143.7°   17.3° -109.7°   42.1°  -93.0°  141.7°   56.7° -123.0°   E13                                       
H14     -65.8°  126.6°  -54.0°  138.3°   70.4°  -70.7°  147.4°  -41.2° -144.3°   62.6°   70.4° -145.3°  -82.6°   H14                                
E15      94.2°  -71.0°  108.6°  -53.7° -131.6°   88.3°  -36.0°  120.9°  -27.0° -138.4°  -89.0°   57.0°  -78.8° -157.7°   E15                         
H16     -56.0°  141.0°  -39.0°  162.0°   77.0°   63.8°  176.1°   29.7°  159.3°  -74.2°   85.3° -132.1°   67.6°   30.9°  143.1°   H16                  
H17     136.1°  -48.4° -132.5°   58.8°  -46.7°  134.3°   75.4°  120.2°   88.0°  -40.9°   96.0°  -82.7°  151.6°   80.2° -111.3°  105.5°   H17           
H18     -44.5°  134.9°   44.1° -128.2°  124.2°  -48.1° -113.2°  -55.3° -101.4°  129.5°  -88.7°   98.9°  -32.0°  -93.4°   77.2°  -66.3°  170.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1dcia_ :    (SER56)  (GLN302)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2vreb_ :    (SER31)  (TRP271)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4izba_ :    (ASP13)  (VAL242)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
 d3q0gc_ :     (ILE6)  (SER217)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d4izda_ :    (ASP13)  (MET226)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
 d4izca_ :    (ASP13)  (MET226)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
 d4izbb_ :    (ASP13)  (VAL242)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
 d4fjwd_ :     (THR5)  (GLU237)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d4jylc_ :     (LEU2)  (ASP231)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
 d2vrec_ :    (SER31)  (TRP271)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3q0jf_ :     (THR5)  (GLU237)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d3h81b_ :    (ILE27)  (ALA254)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d4fjwe_ :     (THR5)  (GLU237)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d1o8uf_ :    (ASN17)  (ASP236)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
 d4jyla_ :     (LEU2)  (ASP231)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
 d1szod_ :    (ASN17)  (ALA235)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
 d4jyld_ :     (GLU4)  (ASP231)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
 d3pzkb_ :     (THR5)  (ALA233)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 1773]
 d2ppya_ :    (TYR10)  (SER244)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d2j5ie_ :    (THR10)  (LEU229)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 294]
 d2ppyc_ :    (TYR10)  (MSE225)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Geobacillus kaustophilus [TaxId: 235909]
 d2vrea_ :    (SER31)  (GLN277)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4izcb_ :    (ASP13)  (LYS258)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]
 d1szoa_ :    (ASN17)  (GLY252)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
 d4jylf_ :     (LEU2)  (ASP231)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Thermoplasma volcanium [TaxId: 273116]
 d4fjwf_ :     (ILE6)  (GLU237)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d1szof_ :    (ASN17)  (ALA235)   [view usage] : c.14.1.3 |ClpP/crotonase |ClpP/crotonase |Crotonase-like |6-oxo camphor hydrolase |Rhodococcus erythropolis [TaxId: 1833]
 d4olqf_ :     (ARG6)  (ASN239)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Hyphomonas neptunium [TaxId: 228405]
 d3q0jb_ :     (ILE6)  (GLU237)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Mycobacterium tuberculosis [TaxId: 83332]
 d4izdb_ :    (ASP13)  (GLN245)   [view usage] : c.14.1.0 |ClpP/crotonase |ClpP/crotonase |automated matches |automated matches |Ruegeria pomeroyi [TaxId: 246200]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.14