Protein Concepts Dictionary

Tableau information

Concept source:  d3bjuc2  amino acid (a.a.) range (ASP222)(LEU452)

nSSEs in this Concept: 17

String of secondary struct.elems. (SSEs) defining this concept: HHHEEEEHEEHEEEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASP222)  (ARG228) H1
	  (ARG230)  (LEU236) H2
	  (ASP238)  (GLY262) H3
	  (GLY262)  (GLU267) E4
	  (ILE273)  (ALA278) E5
	  (PHE283)  (GLU289) E6
	  (MET292)  (MET296) E7
	  (GLU301)  (GLY311) H8
	  (ARG314)  (GLY319) E9
	  (THR337)  (ALA343) E10
	  (TYR347)  (GLY367) H11
	  (VAL371)  (ASP376) E12
	  (GLN381)  (PHE387) E13
	  (PHE391)  (ASN395) E14
	  (ASN395)  (GLY405) H15
	  (GLU417)  (ALA431) H16
	  (THR439)  (LEU452) H17

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                     
H2     -106.6°   H2                                                                                                              
H3      -52.9° -100.7°   H3                                                                                                       
E4      -90.5° -133.0°  123.6°   E4                                                                                                
E5      133.3°   43.4°   92.6° -136.0°   E5                                                                                         
E6      -21.1° -120.0°  -69.2°   69.5°  154.1°   E6                                                                                  
E7      128.3°   22.7°  107.5° -128.6°   25.1°  142.7°   E7                                                                           
H8       45.3°  -83.5°  -22.8°  133.0°   90.2°  -65.8°  -96.5°   H8                                                                    
E9     -112.8°   98.4° -159.0°  -35.6° -107.4°   93.6°  -93.6°  156.5°   E9                                                             
E10      61.9°  -93.7°   10.2°  132.3°   82.3°  -79.1°   98.1°  -24.6°  167.8°   E10                                                     
H11     101.5°  -51.5°  138.9°  -82.6°  -84.6°   97.1°  -60.0°  116.0°  -52.6°  137.6°   H11                                              
E12    -126.8°  118.6° -133.7°   38.0°  -99.5°  106.3° -101.6° -155.9°   37.8° -134.9°   87.0°   E12                                       
E13     -38.0°  -93.9°   18.9°  122.7°   99.7°  -57.5° -107.3°  -10.8° -150.9°   25.2° -121.7°  146.7°   E13                                
E14    -102.7°  140.3°  -76.3°   72.0°   96.9°  -96.4°  119.4°  -99.1°   94.3°  -77.0°  144.8°   58.0°  -92.9°   E14                         
H15    -168.4°   80.8°  135.6°  -77.9°   58.1° -147.3°   60.5°  146.1°  -56.4°  127.5°  -75.8°  -42.3°  152.3°   75.3°   H15                  
H16     133.4°   55.0°  155.1°  -81.2°   66.4° -125.1°   48.2°  137.6°  -45.7°  146.2°  -32.0°  -66.2°  147.0°  117.6°   44.0°   H16           
H17     121.2°   18.0°  117.5° -118.2°   42.5°  129.9°   17.4°  101.4°  -82.7°  109.5°  -42.9° -100.6°  111.9°  133.7°   64.6°   37.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3bjuc2 :   (ASP222)  (LEU452)   [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3bjub2 :   (LYS223)  (LEU452)   [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1bbua2 :   (ASP161)  (GLY358)   [view usage] : d.104.1.1 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain |Lysyl-tRNA synthetase (LysRS) |Escherichia coli, gene lysS [TaxId: 562]
 d3bjua2 :   (ASP222)  (LEU452)   [view usage] : d.104.1.0 |Class II aaRS and biotin synthetases |Class II aaRS and biotin synthetases |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 d.104