Protein Concepts Dictionary

Tableau information

Concept source:  d1ot1a4  amino acid (a.a.) range (THR185)(TYR406)

nSSEs in this Concept: 17

String of secondary struct.elems. (SSEs) defining this concept: HHEHEEHEHHHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (THR185)  (ILE190) H1
	  (ASN204)  (LEU221) H2
	  (ASP224)  (ALA230) E3
	  (PRO235)  (LYS250) H4
	  (VAL252)  (VAL262) E5
	  (ASN263)  (PRO267) E6
	  (PRO267)  (ASN274) H7
	  (GLY277)  (ASP282) E8
	  (ASP282)  (VAL292) H9
	  (VAL292)  (ASN296) H10
	  (MET300)  (ASP313) H11
	  (GLN320)  (ILE324) E12
	  (ARG340)  (SER352) H13
	  (VAL355)  (TYR359) E14
	  (ASP371)  (ALA376) H15
	  (THR386)  (ASN401) H16
	  (ASN401)  (TYR406) H17

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                     
H2       77.3°   H2                                                                                                              
E3      113.7°  146.6°   E3                                                                                                       
H4       57.7°  -37.3°  171.3°   H4                                                                                                
E5      128.5°  115.1°  -32.8° -152.4°   E5                                                                                         
E6      -82.5° -110.4°  102.5°  -76.0°  129.0°   E6                                                                                  
H7      -52.9°  -63.6°  148.8°  -26.3° -178.2°  -51.5°   H7                                                                           
E8      107.5°   76.0°  -70.6°  112.0°  -41.7° -169.4° -137.5°   E8                                                                    
H9      112.2°   69.4°  -77.3°  106.5°  -46.2° -164.3° -132.7°  -10.0°   H9                                                             
H10     102.8°  106.2°  -41.8°  137.6°  -26.7°  143.3°  154.2°   32.5°  -41.7°   H10                                                     
H11     -71.3° -106.5°  106.9°  -70.1°  136.6°   11.2°  -44.3°  176.7° -173.3°  144.3°   H11                                              
E12      89.3°   77.3°  -71.7°  107.9°  -50.7°  167.1°  129.3°  -19.2°  -27.6°   29.9°  158.4°   E12                                       
H13     -89.1°  -94.0°  116.8°  -64.1°  135.3°  -19.7°  -44.5°  157.7°  148.1° -158.3°  -25.3° -171.2°   H13                                
E14      65.3°   91.5°  -67.8°  107.1°  -64.6°  136.1°  116.4°  -49.7°  -58.7°   38.0°  127.6°  -31.2° -152.0°   E14                         
H15     -64.6°   13.3°  153.8°  -27.3°  125.7° -103.1°  -53.2°   84.7°   79.5°  112.0°  -97.4°   82.1°  -89.4°   89.7°   H15                  
H16     -98.1°  -92.7°  115.3°  -67.1°  128.7°  -26.8°  -50.8°  148.7°  139.4°  154.3°  -34.2°  166.0°   -9.5° -161.5°  -90.3°   H16           
H17     -95.8°  172.4°   34.1° -140.4°   66.7°   71.3°  114.8°  103.5°  111.1°  -72.0°   73.7°   99.7°  -89.0°   82.6° -160.4°  -91.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1eo5a4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1cxfa4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1cxla4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1dtua4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1ot1a4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1cdga4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1peza4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1cgxa4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1ot2a4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]
 d1cgya4 :   (THR185)  (TYR406)   [view usage] : c.1.8.1 |TIM beta/alpha-barrel |(Trans)glycosidases |Amylase, catalytic domain |Cyclodextrin glycosyltransferase |Bacillus circulans, different strains [TaxId: 1397]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1