Tableau information
Concept source: d3pd8c_ amino acid (a.a.) range (GLY70)(GLY256)
nSSEs in this Concept: 17
String of secondary struct.elems. (SSEs) defining this concept: HEHEEHEHHEHEHEEHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(GLY70) (VAL76) H1
(ASP81) (ALA85) E2
(LEU91) (ILE97) H3
(MET104) (ILE108) E4
(ILE108) (LYS113) E5
(SER120) (LYS126) H6
(GLU129) (LEU135) E7
(SER139) (ARG145) H8
(ALA150) (ALA162) H9
(VAL166) (THR170) E10
(THR170) (LYS180) H11
(LYS184) (LEU189) E12
(SER191) (ARG200) H13
(ASP204) (GLY210) E14
(ASP213) (ILE219) E15
(GLY228) (GLY242) H16
(GLY242) (GLY256) H17
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 -166.2° E2
H3 22.7° -158.7° H3
E4 -129.6° 58.6° 139.1° E4
E5 141.8° 48.9° 120.2° 66.3° E5
H6 -108.2° 83.9° 109.3° -32.1° 66.2° H6
E7 18.8° -154.1° -13.6° -147.1° 130.1° -120.6° E7
H8 -103.7° -74.5° 125.7° -44.9° -107.4° -66.7° -120.7° H8
H9 -90.2° 103.2° -76.9° 75.4° 57.7° 46.2° -90.5° -112.2° H9
E10 -54.0° 122.8° -36.1° 160.7° 99.6° 131.2° -35.4° -152.6° -86.0° E10
H11 174.0° -17.1° 160.9° 44.5° -40.7° 67.1° -167.0° 71.3° 88.7° 131.7° H11
E12 28.4° -138.1° -38.1° -146.5° 146.9° -135.5° -24.6° 105.0° -114.8° -47.6° -155.0° E12
H13 132.2° 52.6° 109.7° 87.7° 22.8° 88.5° 115.3° -123.9° 69.3° 81.0° -52.6° 125.8° H13
E14 -73.2° -97.6° -95.0° 87.9° 144.7° -104.7° -84.6° 43.0° -140.6° -110.1° 104.1° -63.7° -146.5° E14
E15 43.9° -140.1° 21.2° 138.7° -99.5° 106.6° 31.1° 145.3° -64.9° -26.5° -139.9° 54.3° -88.7° -115.6° E15
H16 139.0° -30.3° 130.5° -88.9° 59.3° 112.7° 123.8° -94.8° 116.2° 95.0° -46.1° -111.5° 48.3° -98.5° 118.0° H16
H17 145.9° -46.9° 126.9° -54.7° -11.7° 56.0° 138.4° -96.8° 56.6° 110.5° -34.8° 158.1° -34.3° -136.8° 107.3° -63.9°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d4g8mb_ : (GLY70) (TYR253) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d3pd8c_ : (GLY70) (GLY256) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4u2rc_ : (GLY73) (LYS258) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4u1oa_ : (GLY73) (LYS253) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d2i3vc_ : (GLY73) (GLY259) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4f22a_ : (GLY73) (LYS253) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
d2i3wa_ : (GLY73) (LYS258) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4u2rb_ : (GLY73) (GLY259) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4u2rd_ : (GLY73) (GLY259) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4u2ra_ : (GLY73) (LYS258) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
d4kqpa_ : (PHE308) (GLU481) [view usage] : c.94.1.0 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |automated matches |automated matches |Lactococcus lactis [TaxId: 272623]
d1ftla_ : (GLY73) (GLY259) [view usage] : c.94.1.1 |Periplasmic binding protein-like II |Periplasmic binding protein-like II |Phosphate binding protein-like |Glutamate receptor ligand binding core |Norway rat (Rattus norvegicus), GluR2 [TaxId: 10116]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.94