Protein Concepts Dictionary

Tableau information

Concept source:  d1fofa_  amino acid (a.a.) range (THR26)(GLY262)

nSSEs in this Concept: 17

String of secondary struct.elems. (SSEs) defining this concept: HEEHHHHHHHHEEEEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (THR26)   (ALA36) H1
	   (GLY39)   (LYS45) E2
	   (LYS49)   (THR53) E3
	   (ASP55)   (LYS61) H4
	   (ALA66)   (GLY81) H5
	  (THR107)  (SER115) H6
	  (PRO118)  (GLY128) H7
	  (GLU129)  (SER140) H8
	  (PHE153)  (GLY157) H9
	  (SER162)  (ASN176) H10
	  (SER181)  (VAL193) H11
	  (THR194)  (PRO198) E12
	  (TYR200)  (GLY210) E13
	  (PRO217)  (VAL223) E14
	  (GLY224)  (GLU229) E15
	  (GLU231)  (ASP240) E16
	  (ASN243)  (GLY262) H17

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                                     
E2      148.9°   E2                                                                                                              
E3      -42.8°  141.7°   E3                                                                                                       
H4       76.7°  -88.2°  119.5°   H4                                                                                                
H5      112.7°   51.2°  153.7°  -37.7°   H5                                                                                         
H6      -67.6° -138.0°  -37.0°  131.3°  159.4°   H6                                                                                  
H7     -119.5°   71.3° -144.8°  -57.6°   46.4° -114.4°   H7                                                                           
H8     -135.4°   60.8°  -92.8° -147.3°  109.8°  -77.4°   99.5°   H8                                                                    
H9      -76.4°  130.3°  -45.1°  135.6°  155.3°   -9.0° -108.9°  -70.6°   H9                                                             
H10     116.3°  -34.0°  135.7°  -62.4°   34.8° -165.1°   77.1°   91.6° -161.8°   H10                                                     
H11      52.4° -122.6°   20.2°  124.1°  145.6°  -52.0° -164.9°  -84.4°  -58.4° -117.5°   H11                                              
E12     129.1°  -39.6°  102.3° -120.0°  -87.7° -108.2°  108.4°   40.1°  104.4°  -57.6°  -84.1°   E12                                       
E13     -44.1°  158.1°  -59.8°   78.8°  112.2°   52.6°  -86.8° -126.5°  -57.4°  140.8°   79.3°  160.1°   E13                                
E14     134.1°  -16.2°  130.1°  -87.9°   54.7° -140.8°   84.7°   65.4°  135.6°  -26.3° -110.0°  -33.1°  166.6°   E14                         
E15     131.5°  -32.0°  109.7° -111.1°   78.7° -117.3°  102.6°   46.8°  113.2°  -48.7°  -90.8°   -9.1° -168.9°   24.1°   E15                  
E16     -35.6°  172.4°  -45.5°   88.2° -124.1°   44.0° -101.1° -121.2°  -50.7°  146.6°   64.8°  147.0°  -14.4°  169.7°  155.1°   E16           
H17     153.9°  -29.9°  118.4° -117.9°  -80.3°  108.4°   86.1°   30.9°  101.3°  -61.3° -103.9°  -25.4°  153.5°  -35.8°  -25.5°  152.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1k6ra_ :    (THR26)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2wkhb_ :    (LYS30)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d1fofa_ :    (THR26)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2rl3a_ :    (THR26)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2rl3b_ :    (LYS30)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d2wkha_ :    (THR26)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d1k55c_ :    (THR26)  (LYS251)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]
 d1e3ua_ :    (LYS30)  (GLY262)   [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |Class D beta-lactamase |Pseudomonas aeruginosa, OXA-10 [TaxId: 287]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   e.3