Protein Concepts Dictionary

Tableau information

Concept source:  d1jwla2  amino acid (a.a.) range (LEU62)(ASP274)

nSSEs in this Concept: 17

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEHEHEHEHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU62)   (THR68) E1
	   (LEU73)   (GLY91) H2
	   (GLY91)  (ARG101) E3
	  (VAL104)  (GLN117) H4
	  (SER120)  (TYR126) E5
	  (ASP130)  (ALA139) H6
	  (VAL143)  (PHE147) E7
	  (ASN157)  (PHE161) E8
	  (SER162)  (LEU177) H9
	  (GLN181)  (ALA186) E10
	  (SER191)  (GLN209) H11
	  (ALA214)  (ASP219) E12
	  (SER221)  (GLU235) H13
	  (THR240)  (ALA245) E14
	  (ASP247)  (GLY261) H15
	  (ARG263)  (ILE268) H16
	  (ILE268)  (ASP274) E17

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                     
H2     -177.0°   H2                                                                                                              
E3      -20.6°  160.4°   E3                                                                                                       
H4      162.5°  -14.8°  153.3°   H4                                                                                                
E5      -15.9°  163.4°  -36.2°  159.6°   E5                                                                                         
H6      149.1°  -29.6°  133.8°  -20.1°  159.6°   H6                                                                                  
E7      -40.0°  139.5°  -60.1°  141.3°  -24.1°  157.3°   E7                                                                           
E8      -57.7°  120.6°  -78.2°  117.9°  -43.5°  132.2°  -25.1°   E8                                                                    
H9      -47.6°  131.6°  -68.0°  132.9°  -31.8°  149.6°   -8.4°   18.1°   H9                                                             
E10     122.9°  -56.4°  106.0°   47.8° -137.2°   27.8°  156.2°  141.2°  156.4°   E10                                                     
H11     -68.8°  112.7°  -81.4° -125.0°  -57.1° -142.0°  -42.3°  -57.0°  -42.7° -160.8°   H11                                              
E12    -125.3°  -52.8° -114.4°   39.6° -134.7°   25.0°  142.5°  121.4°  138.7°  -21.3°  164.0°   E12                                       
H13      33.1° -149.0°   43.9° -162.4°   27.2°  169.8°  -32.7°  -57.9°  -40.2°  147.1°  -37.5°  157.9°   H13                                
E14     134.9°  -45.3°  115.4°  -41.2° -150.5°   22.7° -172.9°  152.8°  170.8°  -16.8°  144.4°  -32.3°  148.1°   E14                         
H15     -30.3°  147.7°  -50.6°  141.6°  -18.1°  147.6°  -19.4°  -27.6°  -23.0°  136.8°  -61.4°  125.9°  -41.8°  153.5°   H15                  
H16      74.3° -108.7°   69.7° -122.5°   75.3° -121.4°   78.5° -101.3°  -83.6° -116.5°  -48.7° -137.2°   49.0° -105.5°   90.8°   H16           
E17     148.5°  -31.8°  128.8°  -29.6° -164.1°  -15.6°  170.8°  146.8°  162.4°  -27.8°  135.7°  -35.8°  154.3°  -13.6° -161.7° -106.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d4rkqa_ :    (THR71)  (ASP282)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Arthrobacter sp. [TaxId: 290399]
 d1efab2 :    (SER61)  (ASP274)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
 d3k9ca_ :    (ARG72)  (ASP280)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d1jwlc_ :    (LEU62)  (ASP274)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
 d1jwla2 :    (LEU62)  (ASP274)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
 d1bdha2 :    (LYS60)  (ASP275)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Purine repressor (PurR), C-terminal domain |Escherichia coli [TaxId: 562]
 d3cs3a_ :    (ASN60)  (ASP264)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Enterococcus faecalis [TaxId: 226185]
 d1jfta2 :    (LYS60)  (ASP275)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Purine repressor (PurR), C-terminal domain |Escherichia coli [TaxId: 562]
 d2rgya_ :    (ILE88)  (ASP302)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Burkholderia phymatum [TaxId: 391038]
 d2puea2 :    (LYS60)  (ASP275)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Purine repressor (PurR), C-terminal domain |Escherichia coli [TaxId: 562]
 d1jfsa2 :    (LYS60)  (ASP275)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Purine repressor (PurR), C-terminal domain |Escherichia coli [TaxId: 562]
 d1jh9a2 :    (LYS60)  (ASP275)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Purine repressor (PurR), C-terminal domain |Escherichia coli [TaxId: 562]
 d3k9cb_ :    (ARG72)  (ASP280)   [view usage] : c.93.1.0 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |automated matches |automated matches |Rhodococcus jostii [TaxId: 101510]
 d1efaa2 :    (LEU62)  (ASP274)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |Lac-repressor (lacR) core (C-terminal domain) |Escherichia coli [TaxId: 562]
 d3edca_ :    (LEU62)  (ASP274)   [view usage] : c.93.1.1 |Periplasmic binding protein-like I |Periplasmic binding protein-like I |L-arabinose binding protein-like |automated matches |Escherichia coli K-12 [TaxId: 83333]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.93