Protein Concepts Dictionary

Tableau information

Concept source:  d3ovpa_  amino acid (a.a.) range (LYS6)(SER198)

nSSEs in this Concept: 17

String of secondary struct.elems. (SSEs) defining this concept: EHEEHEHHEHEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS6)   (LEU12) E1
	   (LEU19)   (SER29) H2
	   (LEU34)   (ASP40) E3
	   (PRO45)   (PHE49) E4
	   (HIS51)   (GLN60) H5
	   (PRO65)   (MET71) E6
	   (LYS75)   (VAL80) H7
	   (LYS81)   (GLY87) H8
	   (ASN89)   (HIS94) E9
	  (PRO101)  (GLY112) H10
	  (LYS114)  (LYS120) E11
	  (VAL125)  (TRP131) H12
	  (MET137)  (VAL143) E13
	  (MET153)  (PRO168) H14
	  (ASP171)  (GLY176) E15
	  (GLY179)  (GLY190) H16
	  (MET193)  (SER198) E17

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                                     
H2      159.2°   H2                                                                                                              
E3      -41.0°  144.9°   E3                                                                                                       
E4      105.4°  -84.4° -124.3°   E4                                                                                                
H5      124.2°  -54.9°  159.5°   37.1°   H5                                                                                         
E6      -58.6°  119.9°  -26.8° -149.9°  173.0°   E6                                                                                  
H7      107.0°  -81.4°  128.4°    4.6°  -32.7°  154.3°   H7                                                                           
H8      109.3°  -67.9°  147.2°   36.0°  -15.0°  165.1°  -31.4°   H8                                                                    
E9      -69.3°  102.9°  -47.1° -171.2°  151.7°  -21.3°  175.5°  151.7°   E9                                                             
H10     101.7°  -83.9°  128.7°   12.4°  -31.0°  155.5°    9.1°  -25.5°  169.9°   H10                                                     
E11     -62.2°  102.3°  -59.3°  158.2°  133.0°  -41.0°  155.5°  127.6°  -25.3°  146.3°   E11                                              
H12     124.1°  -74.9°  113.5°  -38.6°  -59.1°  125.8°  -41.3°  -67.3°  138.2°  -50.5°  163.2°   H12                                       
E13     -47.6°  112.2°  -66.4°  130.9°  116.5°  -59.8°  128.7°  106.0°  -51.0°  119.6°  -27.4°  168.3°   E13                                
H14     143.6°  -57.1°  115.9°  -60.7°  -66.7°  115.3°  -62.0°  -79.5°  119.2°  -70.8°  140.1°  -25.6°  165.8°   H14                         
E15     -33.0°  126.2°  -62.0°  117.8°  114.1°  -64.2°  116.7°  100.9°  -61.8°  108.1°  -41.9°  151.6°  -17.2°  176.6°   E15                  
H16     135.9°  -59.4°   95.6°  -94.0°  -94.9°   85.1°  -95.5° -109.5°   85.8° -104.2°  107.4°  -56.6°  134.7°  -33.5°  147.5°   H16           
E17     -35.5°  126.1°  -73.9°   98.2°   97.4°  -82.2°   97.0°   83.1°  -81.5°   88.4°  -61.0°  134.2°  -34.2° -158.8°  -19.8°  167.1°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ovpa_ :     (LYS6)  (SER198)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ovpb_ :     (LYS6)  (SER198)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ovqb_ :     (CYS5)  (SER198)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ovrb_ :     (GLY4)  (SER198)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qc3a_ :     (GLY4)  (SER198)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1