Protein Concepts Dictionary

Tableau information

Concept source:  d4ajgd_  amino acid (a.a.) range (LEU468)(GLY707)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU468)  (LEU474) H1
	  (TRP486)  (GLY499) H2
	  (GLY499)  (GLU504) H3
	  (LEU505)  (TYR519) H4
	  (VAL522)  (ASN544) H5
	  (THR549)  (GLY555) H6
	  (LEU556)  (CYS562) H7
	  (SER571)  (ASP579) H8
	  (HIS580)  (TYR586) H9
	  (MET591)  (LEU605) H10
	  (ASN609)  (LEU614) H11
	  (SER615)  (THR633) H12
	  (ASP634)  (GLY652) H13
	  (GLN659)  (CYS676) H14
	  (CYS676)  (LYS680) H15
	  (TRP682)  (GLY707) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
H2      -79.2°   H2                                                                                                       
H3       80.1°  115.3°   H3                                                                                                
H4       60.7°  137.3°   73.7°   H4                                                                                         
H5      -91.4°   19.4°  132.9°  140.0°   H5                                                                                  
H6      100.1°  173.7°  -70.5°  -40.3° -155.8°   H6                                                                           
H7       84.5°  163.6°  -62.7°  -27.1°  163.0°   16.3°   H7                                                                    
H8      -64.3° -114.8°   16.9°   61.8° -134.1°   70.0°   58.1°   H8                                                             
H9      -60.6°  -23.9°   95.6° -121.2°  -42.9° -158.6° -142.4°  -91.9°   H9                                                      
H10    -142.1°  -80.4°  -80.3°  140.9°  -78.8°  103.5°  114.1°   96.8°   89.6°   H10                                              
H11     -79.0°  -14.7°  101.0° -139.7°   32.3° -171.5° -158.8° -102.3°   18.5°  -73.3°   H11                                       
H12      68.3°  125.9° -100.6°  -27.1°  119.1°  -48.8°  -44.2°  -88.8° -122.2°  147.6°  136.6°   H12                                
H13     -77.0°   25.9°  138.1° -121.8°   18.3° -147.9° -146.7° -131.9°   42.5°  -97.1°   40.4° -102.7°   H13                         
H14     118.0°  147.2°  -95.9°  -59.0°  127.9°  -28.4°  -43.1°   98.0° -167.8°   96.1°  158.0°  -51.5° -125.8°   H14                  
H15     126.1°  105.9° -135.2°  -88.2°   86.6°  -69.4°  -82.5°  139.3°  128.3°   90.1°  118.0°  -66.2°  -86.3°  -41.3°   H15           
H16     -58.0° -120.5°   28.0°   49.6° -139.6°   63.3°   49.4°   12.5°  -96.7°  108.3° -109.8°  -76.4° -132.2°   91.7° -131.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3hqwa_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2ouvb_ :   (CYS469)  (THR688)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ousb_ :   (CYS469)  (ALA689)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ovva_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4lm1b_ :   (LEU468)  (ALA689)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ddla_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qi3a_ :   (PRO190)  (VAL447)   [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3n3za_ :   (ALA195)  (GLU434)   [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Human (Homo sapiens) [TaxId: 9606]
 d3ui7b_ :   (LEU468)  (LYS719)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4ajgd_ :   (LEU468)  (GLY707)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ovya_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d4phwa_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qgea_ :   (SER189)  (VAL447)   [view usage] : a.211.1.2 |HD-domain/PDEase-like |HD-domain/PDEase-like |PDEase |High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A |Chimpanzee (Pan troglodytes) [TaxId: 9598]
 d4tpma_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2oupb_ :   (CYS469)  (ALA689)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2ounb_ :   (CYS469)  (ALA689)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4muwb_ :   (PRO455)  (GLY697)   [view usage] : a.211.1.0 |HD-domain/PDEase-like |HD-domain/PDEase-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.211