Protein Concepts Dictionary

Tableau information

Concept source:  d3ewfa_  amino acid (a.a.) range (SER21)(CYS244)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HHEHHHHEHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER21)   (ASP29) H1
	   (ARG37)   (ALA49) H2
	   (ARG55)   (VAL61) E3
	   (SER63)   (THR69) H4
	   (ASP73)   (GLN84) H5
	   (HIS90)   (GLY97) H6
	  (ILE108)  (GLY129) H7
	  (LYS132)  (SER138) E8
	  (ASP157)  (ARG166) H9
	  (GLU170)  (ASP176) E10
	  (ASP183)  (PHE189) H11
	  (LYS194)  (LEU200) E12
	  (PHE207)  (ASP213) H13
	  (ASP213)  (LEU219) H14
	  (TYR225)  (ILE231) E15
	  (GLU238)  (CYS244) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
H2     -137.6°   H2                                                                                                       
E3       58.9° -163.5°   E3                                                                                                
H4      -54.8°  100.7°  -91.0°   H4                                                                                         
H5       84.2°  -89.1°  -92.7°  128.4°   H5                                                                                  
H6      -97.3°   57.5°  129.8°   45.0° -131.0°   H6                                                                           
H7     -134.3°   39.8°  133.7°   79.7° -128.4°   38.1°   H7                                                                    
E8      -42.8° -134.5°  -53.8°  -97.5°   47.9° -136.2°  171.7°   E8                                                             
H9      141.2°  -60.5°  107.9°   92.3° -134.4°   61.7°  -29.2°  159.1°   H9                                                      
E10     -45.7°  102.3°  -90.9°  -81.4°   47.1° -101.9°  131.3°  -40.4°  160.4°   E10                                              
H11     110.4°  -97.3°   72.7°   81.6° -147.7°   77.2°  -61.1°  126.5°  -37.0° -156.1°   H11                                       
E12     -52.8°   90.2° -104.0°  -75.6°   53.6°  -88.8°  116.9°  -54.8°  146.0°  -14.4° -157.0°   E12                                
H13     106.2°  -75.7°  102.1°   55.5° -164.8°  -38.2°  -36.7°  146.0°  -37.0° -134.6°   39.1° -124.1°   H13                         
H14     125.8°  -94.7°   69.9°  113.6° -115.9° -102.6°  -72.8°  115.4°  -43.7°  155.0°  -32.2°  168.5°   67.3°   H14                  
E15     -53.8°   90.0° -104.0°  -77.6°   51.6°  -90.4°  117.7°  -54.0°  146.7°  -13.7° -158.9°    2.0° -125.9°  166.7°   E15           
H16     113.7°  -95.9°   73.2°   85.9° -143.8°   79.8°  -61.0°  126.8°  -35.4°  159.4°    4.3°  161.3°   41.9°  -28.0°  163.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2v5wa_ :    (SER21)  (ALA254)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qa1b_ :    (SER21)  (CYS244)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qa2b_ :    (LYS36)  (ALA254)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qa3a_ :    (SER21)  (ALA254)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ewfa_ :    (SER21)  (CYS244)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2v5xa_ :    (SER21)  (ALA254)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2v5wb_ :    (SER21)  (ALA254)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qa0a_ :    (LYS36)  (ASN256)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4qa4a_ :    (LYS36)  (ALA254)   [view usage] : c.42.1.2 |Arginase/deacetylase |Arginase/deacetylase |Histone deacetylase, HDAC |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.42