Protein Concepts Dictionary

Tableau information

Concept source:  d3rs8a1  amino acid (a.a.) range (MET1)(SER205)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHEHEHEEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (MET1)   (GLY13) H1
	   (ARG17)   (GLU34) H2
	   (ARG42)   (GLY48) E3
	   (GLY50)   (LEU64) H4
	   (LYS68)   (PHE74) E5
	   (THR80)   (GLY94) H6
	   (GLY95)   (GLU99) E7
	  (PRO103)  (PHE109) H8
	  (ASP110)  (ALA115) E9
	  (GLU128)  (LYS138) H10
	  (VAL142)  (VAL146) E11
	  (ASP167)  (PHE172) E12
	  (LYS176)  (LEU181) H13
	  (PHE182)  (THR188) H14
	  (LYS190)  (ASN195) E15
	  (VAL200)  (SER205) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
H2      128.0°   H2                                                                                                       
E3      -86.2°  144.6°   E3                                                                                                
H4       71.3°  -58.7° -156.7°   H4                                                                                         
E5      -97.2°  134.8°  -16.5° -158.6°   E5                                                                                  
H6       78.2°  -59.6° -150.8°   19.2° -143.1°   H6                                                                           
E7     -132.0°   98.3°  -52.6°  142.4°  -37.7° -124.8°   E7                                                                    
H8       71.3°  -61.8° -137.7°   40.4° -153.9°   59.2° -155.8°   H8                                                             
E9      -69.8°  153.1°  -20.9°  140.4°  -37.3°  146.0°  -73.3°  117.6°   E9                                                      
H10     107.4°   24.3° -152.1°   47.3° -152.5°   57.1°  120.5°  -37.8° -143.8°   H10                                              
E11     -54.4°  158.4°  -35.3°  124.8°  -50.7°  132.0°  -87.9°  106.0°  -15.6° -139.0°   E11                                       
E12      38.9°  148.8°  -53.6°  107.1°  -68.8°  116.9° -106.2°   89.2°  -33.6°  125.1°  -18.3°   E12                                
H13     155.3°  -29.5°  115.1°  -88.2°  106.4°  -86.9°   72.7°  -84.2°  127.2°  -48.0°  139.9° -147.2°   H13                         
H14     -67.3°  -65.5° -149.2°  -10.0°  148.6°   13.7°  138.3°   49.0° -137.0°   56.6° -121.7° -105.1°  -94.5°   H14                  
E15      23.5°  143.2°  -66.3°   92.8°  -80.0°  101.6° -117.6°   81.5°  -47.6°  119.2°  -32.0°  -15.4° -156.4°   90.1°   E15           
H16     152.2°  -77.7°   67.1° -136.0°   58.6° -129.1°   32.6° -123.9°   82.5°  -94.4°   97.8°  114.0°  -48.4° -140.5°  129.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3rs8a1 :     (MET1)  (SER205)   [view usage] : c.104.1.1 |YjeF N-terminal domain-like |YjeF N-terminal domain-like |YjeF N-terminal domain-like |Hypothetical protein TM0922, N-terminal domain |Thermotoga maritima [TaxId: 2336]
 d3rssa1 :     (MET1)  (SER205)   [view usage] : c.104.1.1 |YjeF N-terminal domain-like |YjeF N-terminal domain-like |YjeF N-terminal domain-like |Hypothetical protein TM0922, N-terminal domain |Thermotoga maritima [TaxId: 2336]
 d2ax3a2 :     (MSE1)  (SER205)   [view usage] : c.104.1.1 |YjeF N-terminal domain-like |YjeF N-terminal domain-like |YjeF N-terminal domain-like |Hypothetical protein TM0922, N-terminal domain |Thermotoga maritima [TaxId: 2336]
 d3rrba1 :     (MET1)  (SER205)   [view usage] : c.104.1.1 |YjeF N-terminal domain-like |YjeF N-terminal domain-like |YjeF N-terminal domain-like |Hypothetical protein TM0922, N-terminal domain |Thermotoga maritima [TaxId: 2336]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.104