Protein Concepts Dictionary

Tableau information

Concept source:  d2bwob_  amino acid (a.a.) range (PRO63)(SER260)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HHEHEHEHEEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO63)   (ALA75) H1
	   (ALA91)  (GLN105) H2
	  (GLU107)  (SER113) E3
	  (SER114)  (PHE130) H4
	  (GLY132)  (ASP138) E5
	  (ALA143)  (ILE149) H6
	  (GLY154)  (ARG160) E7
	  (VAL164)  (ASP174) H8
	  (PRO179)  (GLU185) E9
	  (GLY192)  (LYS198) E10
	  (LYS198)  (PHE207) H11
	  (LEU210)  (ASP214) E12
	  (GLY228)  (GLY234) H13
	  (ASP240)  (GLY244) E14
	  (LEU246)  (GLY251) H15
	  (GLY254)  (SER260) E16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
H2      150.3°   H2                                                                                                       
E3      -75.2°  124.9°   E3                                                                                                
H4       75.0°  -75.5°  122.4°   H4                                                                                         
E5     -139.8°   69.9°  -74.0°  144.5°   E5                                                                                  
H6       52.1°  -99.3°  102.3°  -24.9° -161.4°   H6                                                                           
E7     -160.9°   48.8°  -91.5°  124.1°  -21.3° -146.2°   E7                                                                    
H8       48.2° -102.6°  104.2°  -27.1°  167.5°    6.1°  150.6°   H8                                                             
E9     -118.7°   91.0°  -61.9° -165.7°  -21.4° -164.1°  -42.2°  164.9°   E9                                                      
E10      85.5°  -67.2°  151.9°   30.6°  131.5°   49.6°  111.5°  -48.2° -146.2°   E10                                              
H11      58.3°  -92.2°  114.3°   16.8°  161.1°   12.1°  140.8°  -11.3°  176.1°  -37.6°   H11                                       
E12     -99.9°  109.7°  -45.4° -167.7°  -40.0°  145.4°  -61.3°  145.0°  -20.0° -161.6°  156.3°   E12                                
H13     128.0°   38.5° -155.9°   75.5°   82.3°  -98.7°   64.4°  -98.0°   96.9°  -49.9°  -87.0°  115.7°   H13                         
E14     -88.0°  121.3°  -36.5°  157.2°  -52.1°  133.2°  -73.4°  132.5°  -32.4° -164.6°  143.8°  -12.5° -127.2°   E14                  
H15    -124.9°   80.3°  -89.4° -147.5°   30.9° -165.6°   39.6° -160.3°   28.6° -118.6° -154.7°   44.3°  -72.0°   55.3°   H15           
E16      95.3°  -57.9°  159.0°  -36.7°  121.7°  -58.2°  101.5°  -57.3°  137.5°  -10.0°  -46.4°  155.4°   40.7°  164.1°  111.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3tqxa_ :    (PRO57)  (HIS255)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Coxiella burnetii [TaxId: 227377]
 d2bwob_ :    (PRO63)  (SER260)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
 d2bwpa_ :    (PRO63)  (SER260)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]
 d2dgkc_ :    (LYS87)  (ARG290)   [view usage] : c.67.1.6 |PLP-dependent transferase-like |PLP-dependent transferases |Pyridoxal-dependent decarboxylase |Glutamate decarboxylase beta, GadB |Escherichia coli [TaxId: 562]
 d2dr1a_ :    (PRO33)  (ALA220)   [view usage] : c.67.1.0 |PLP-dependent transferase-like |PLP-dependent transferases |automated matches |automated matches |Pyrococcus horikoshii [TaxId: 70601]
 d2bwpb_ :    (PRO63)  (SER260)   [view usage] : c.67.1.4 |PLP-dependent transferase-like |PLP-dependent transferases |GABA-aminotransferase-like |automated matches |Rhodobacter capsulatus [TaxId: 1061]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.67