Protein Concepts Dictionary

Tableau information

Concept source:  d3n0mb_  amino acid (a.a.) range (PRO86)(LYS264)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HHEEHHEHHEEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO86)   (ASN96) H1
	  (GLY111)  (TYR120) H2
	  (ASN122)  (SER126) E3
	  (GLY131)  (GLY137) E4
	  (HIS139)  (VAL145) H5
	  (PRO158)  (ASP166) H6
	  (ASP166)  (ILE172) E7
	  (GLY175)  (ASN179) H8
	  (ASN179)  (SER189) H9
	  (ALA191)  (PRO200) E10
	  (TRP209)  (VAL213) E11
	  (VAL213)  (SER219) E12
	  (PHE222)  (GLY233) H13
	  (THR234)  (LYS239) E14
	  (ALA243)  (LYS249) E15
	  (LYS249)  (LYS264) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
H2       18.2°   H2                                                                                                       
E3     -128.2° -113.7°   E3                                                                                                
E4       40.9°   59.0°  153.0°   E4                                                                                         
H5     -127.3° -109.6°   20.2° -166.5°   H5                                                                                  
H6       70.4°   86.1°  115.2°   42.5°  135.3°   H6                                                                           
E7      126.4°  129.2°  -99.4°  104.4°  -88.5° -114.2°   E7                                                                    
H8      -49.0°  -33.7°   80.1°  -88.0°   79.0°  -98.1°  143.8°   H8                                                             
H9      -99.8°  -88.9°   30.8° -124.1°   44.5°  -96.8° -130.2°  -56.4°   H9                                                      
E10     -62.4°  -54.3° -113.7°  -84.0°  -95.0° -126.2°   77.8°  -69.7° -114.8°   E10                                              
E11     106.4°  113.7°   68.8°   89.8°   88.7°   47.5° -113.8°   99.9°   60.8°  168.0°   E11                                       
E12     117.1°  134.6° -110.1°   76.5° -115.7°   64.6°  -51.1°  162.2°  126.4°  116.3°   71.8°   E12                                
H13      70.5°   86.8°  118.6°  -40.1°  138.7°    4.2° -110.6°  100.8°  100.9° -124.1°   50.4°  -61.7°   H13                         
E14      94.0°   98.7° -127.8°   78.9° -111.6°  106.5°  -32.3°  124.3° -155.9°   55.4° -133.4°  -61.6° -102.4°   E14                  
E15     -61.7°  -57.3°   72.1°  -83.6°   83.7°  -69.9°  171.5°  -37.3°   41.3° -106.1°   62.8°  130.2°   73.8°  155.5°   E15           
H16    -141.6° -126.6°  -13.4° -158.2°   22.8° -116.0°   87.3°  -93.2°  -43.3°  116.8°  -68.5°   98.0°  118.7° -117.5°   84.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3n0mb_ :    (PRO86)  (LYS264)   [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d3e4fa_ :    (PRO86)  (LYS264)   [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d3n0sb_ :    (PRO86)  (LYS263)   [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d3n0ma_ :    (PRO86)  (LYS264)   [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]
 d2nyge_ :    (TRP91)  (ASN270)   [view usage] : c.140.1.2 |TTHA0583/YokD-like |TTHA0583/YokD-like |Aminoglycoside 3-N-acetyltransferase-like |Uncharacterized protein YokD |Bacillus subtilis [TaxId: 1423]
 d3ijwb_ :    (PRO86)  (LYS264)   [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]
 d3ijwa_ :    (PRO86)  (LYS264)   [view usage] : c.140.1.0 |TTHA0583/YokD-like |TTHA0583/YokD-like |automated matches |automated matches |Bacillus anthracis [TaxId: 198094]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.140