Protein Concepts Dictionary

Tableau information

Concept source:  d1td9b_  amino acid (a.a.) range (GLY0)(PRO229)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHHHEHEEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY0)   (VAL12) H1
	   (VAL17)   (PRO22) E2
	   (ASP26)   (LYS40) H3
	   (LEU42)   (GLY48) E4
	   (GLU50)   (ASN61) H5
	   (GLY66)   (ASP71) E6
	   (GLU79)   (LYS90) H7
	   (THR94)  (LEU103) H8
	  (GLU105)  (GLY116) H9
	  (ASP119)  (GLY124) E10
	  (SER128)  (ILE139) H11
	  (LYS147)  (ARG157) E12
	  (GLU159)  (ALA165) E13
	  (ASP174)  (ASP193) H14
	  (GLU195)  (MET200) E15
	  (ASP212)  (PRO229) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
E2      112.9°   E2                                                                                                       
H3      -57.5° -161.3°   H3                                                                                                
E4       93.6°  -19.3° -146.5°   E4                                                                                         
H5     -136.8°   99.6°  -82.7°  116.3°   H5                                                                                  
E6       85.1°  -36.2°  142.2°  -25.1°  134.5°   E6                                                                           
H7      107.3°  -88.9°  109.1°  -94.8°  100.8°  -74.9°   H7                                                                    
H8     -125.2°  101.3°  -76.4° -114.9°  -14.5° -137.5°  115.1°   H8                                                             
H9       51.2°  158.4°   29.2°  141.5° -101.7°  122.2°   83.8° -100.2°   H9                                                      
E10    -149.2°  -37.2°  146.9°  -56.2°   64.7°  -69.8°  -83.7°   70.6° -159.3°   E10                                              
H11      27.8°  124.1°  -56.1°  106.8° -136.3°   88.7°   81.7° -132.5°  -34.7°  156.6°   H11                                       
E12     127.9° -105.4°   75.0° -120.6°   -8.9° -141.3°  107.4°   -8.5°   96.1°  -72.0°  130.0°   E12                                
E13     -72.8°   56.8° -125.7°   45.5°  150.3°   21.0°  -64.3°  157.6° -101.9°   87.4°  -69.8°  158.8°   E13                         
H14      81.1° -124.4°   42.4° -123.9°  -56.7°  144.6°  140.3°  -44.1°   71.5° -109.1°   93.7°  -47.8°  149.8°   H14                  
E15    -116.4°   41.3° -155.5°   49.0°  106.8°  -37.8°  -47.7°  117.6° -126.9°   50.7° -106.4°  115.7°  -43.8°  159.8°   E15           
H16      34.8°  143.7°  -22.9°  125.4° -103.7°  119.8°  113.1°  -95.0°   30.7° -161.8°   40.2°  -95.4°  105.8°  -53.6° -146.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1td9b_ :     (GLY0)  (PRO229)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Bacillus subtilis [TaxId: 1423]
 d1td9d_ :     (GLY0)  (PRO229)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Bacillus subtilis [TaxId: 1423]
 d1qzta_ :     (THR3)  (ALA234)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Methanosarcina thermophila [TaxId: 2210]
 d1qztb_ :     (PHE4)  (ALA234)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Methanosarcina thermophila [TaxId: 2210]
 d1td9a_ :     (MET1)  (PRO229)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Bacillus subtilis [TaxId: 1423]
 d4e4ra_ :     (ALA0)  (GLU231)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |automated matches |Staphylococcus aureus [TaxId: 282458]
 d1r5ja_ :     (SER2)  (ASN232)   [view usage] : c.77.1.5 |Isocitrate/Isopropylmalate dehydrogenase-like |Isocitrate/Isopropylmalate dehydrogenase-like |Phosphotransacetylase |Phosphotransacetylase Pta |Streptococcus pyogenes [TaxId: 1314]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.77