Protein Concepts Dictionary

Tableau information

Concept source:  d2zbtb_  amino acid (a.a.) range (PRO67)(GLU272)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HEHEEHEHHHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO67)   (VAL77) H1
	   (PRO80)   (LYS84) E2
	   (PHE90)  (GLY100) H3
	  (ASP102)  (SER107) E4
	  (VAL126)  (ALA132) E5
	  (LEU135)  (GLY145) H6
	  (ALA147)  (THR151) E7
	  (VAL160)  (LEU180) H8
	  (ARG181)  (ILE192) H9
	  (PHE196)  (HIS205) H10
	  (VAL210)  (ALA214) E11
	  (THR220)  (GLY231) H12
	  (ASP233)  (SER239) E13
	  (SER239)  (SER244) H14
	  (ASP246)  (HIS260) H15
	  (ASP263)  (GLU272) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
E2      162.2°   E2                                                                                                       
H3      -35.9°  159.1°   H3                                                                                                
E4      132.3°  -30.0°  158.3°   E4                                                                                         
E5      104.7°  -57.6°  135.3°  -27.6°   E5                                                                                  
H6      -89.6°  107.8°  -61.0°  137.5°  163.6°   H6                                                                           
E7      100.1°  -64.5°  119.1°  -39.2°  -26.1°  159.4°   E7                                                                    
H8      -78.0°  101.7°  -93.5°  101.1°   96.3°  -78.7°  121.0°   H8                                                             
H9      133.1°  -53.0°  107.1°   68.2°   87.2°  -88.8°   71.3° -146.8°   H9                                                      
H10      21.1° -141.3°   54.1° -111.4°  -83.9°  110.7°  -79.9°  -83.4°  129.7°   H10                                              
E11      97.0°  -73.4°  101.3°  -58.1°  -52.8°  134.5°  -26.8° -146.8°   54.7°  -81.6°   E11                                       
H12     -84.3°   95.6°  -99.1°   96.5°   94.3°  -79.0°  119.8°    6.3° -140.9°  -89.2°  146.4°   H12                                
E13     119.2°  -65.1°   96.1°  -75.2°  -89.0°   90.9°  -68.5°  160.1°   14.0° -116.2°  -47.0°  154.6°   E13                         
H14      74.5° -100.9°   70.5°  -89.1°   79.9° -112.3°   54.4° -150.1°   63.0°  -66.7°   31.0° -155.6°   49.7°   H14                  
H15     -70.2°  103.8°  -95.4°   93.3°   81.5°  -96.3°  104.1°  -19.2°  156.4°  -69.7°  128.4°  -22.3°  168.3°  134.0°   H15           
H16     119.8°  -65.9°   94.8°  -77.7°  -92.5°   87.1°  -72.3°  157.4°  -13.4°  118.2°  -50.7°  152.3°   -3.8°   52.1° -169.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2issc_ :    (SER64)  (SER269)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermotoga maritima [TaxId: 2336]
 d2zbtb_ :    (PRO67)  (GLU272)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d2nv2a_ :    (PRO64)  (LYS269)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
 d4adub_ :    (PRO67)  (LEU272)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Plasmodium berghei [TaxId: 5821]
 d2issa_ :    (SER64)  (SER269)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermotoga maritima [TaxId: 2336]
 d2nv2i_ :    (PRO64)  (LEU267)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Bacillus subtilis [TaxId: 1423]
 d2zbtc_ :    (PRO67)  (SER271)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d4adua_ :    (PRO67)  (LEU272)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Plasmodium berghei [TaxId: 5821]
 d3o07b_ :    (PRO63)  (VAL267)   [view usage] : c.1.2.0 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d2issb_ :    (SER64)  (SER269)   [view usage] : c.1.2.6 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |PdxS-like |automated matches |Thermotoga maritima [TaxId: 2336]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1