Protein Concepts Dictionary

Tableau information

Concept source:  d3i6ba_  amino acid (a.a.) range (ALA17)(GLY178)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: HEHEEHEHEHEHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ALA17)   (ILE26) H1
	   (ARG27)   (ASP32) E2
	   (VAL33)   (SER38) H3
	   (GLY40)   (ASN46) E4
	   (GLY48)   (ALA53) E5
	   (ASN55)   (SER68) H6
	   (GLU71)   (GLY77) E7
	   (LYS81)   (LEU90) H8
	   (HIS94)   (GLY98) E9
	  (LEU103)  (ALA114) H10
	  (VAL120)  (GLY124) E11
	  (TRP130)  (VAL136) H12
	  (GLY137)  (VAL142) E13
	  (HIS146)  (ARG152) H14
	  (ASP154)  (ILE159) E15
	  (GLY164)  (GLY178) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                              
E2      101.3°   E2                                                                                                       
H3     -108.7° -100.8°   H3                                                                                                
E4      -57.4°  -45.8°  101.5°   E4                                                                                         
E5     -121.0°  133.0°   49.2°  150.3°   E5                                                                                  
H6      -63.8° -152.4°  106.0° -120.2°   72.1°   H6                                                                           
E7      100.1°  -23.8° -122.7°  -56.0°  138.8° -131.2°   E7                                                                    
H8      -85.6°  152.9°   52.6°  126.9°  -35.7°  -53.5°  173.9°   H8                                                             
E9      102.8°  -24.4° -121.9°  -58.5°  136.1°  131.7°   -2.8°  171.5°   E9                                                      
H10      61.9°  157.9°  -73.8°  113.3°  -59.4°  -35.5°  160.1°  -25.9°  162.3°   H10                                              
E11    -115.8°  -19.6°   83.4°  -58.4°  114.0° -170.4°  -39.4°  135.8°  -38.7°  153.9°   E11                                       
H12      94.0° -164.4°  -71.1°  147.4°  -32.0°   40.4°  154.6°  -24.9°  152.5°  -34.2° -146.0°   H12                                
E13    -109.2°  -37.2°   63.8°   56.7°  104.3°  166.1°  -60.3°  115.8°  -60.2°  131.0°  -22.9° -133.7°   E13                         
H14      93.1°  164.0°  -80.8°  149.8°  -38.5°   34.0°  146.3°  -34.2°  144.6°  -37.9° -150.3°   -9.9° -142.4°   H14                  
E15     -88.3°  -64.0°   46.6°   55.6°   95.7°  133.6°  -87.6°   90.3°  -88.4°   99.4°  -54.8°  114.0°  -32.5° -123.9°   E15           
H16     -86.6°  169.3°  -83.3° -143.5°  -43.9°   28.3°  148.0°  -33.7°  146.8°  -32.8°  156.7°   12.7°  146.4°    6.5°  124.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2r8ze_ :    (SER16)  (GLY178)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Escherichia coli [TaxId: 217992]
 d3n07d_ :    (PRO14)  (ASN175)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Vibrio cholerae [TaxId: 666]
 d3mn1b_ :     (SER7)  (GLY169)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 264730]
 d3nrje_ :     (MET6)  (GLY169)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 264730]
 d2p9jd_ :     (ARG3)  (LEU159)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
 d3i6ba_ :    (ALA17)  (GLY178)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Escherichia coli [TaxId: 37762]
 d3nrjf_ :    (LEU10)  (GLY169)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Pseudomonas syringae [TaxId: 264730]
 d3ij5d_ :    (ASP16)  (ASP177)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]
 d3n1ua_ :     (SER2)  (ASN171)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Legionella pneumophila [TaxId: 272624]
 d3i6bb_ :    (ASP18)  (GLY178)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
 d3ij5c_ :    (ASP16)  (ASP177)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Yersinia pestis [TaxId: 214092]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108