Tableau information
Concept source: d1ymsb_ amino acid (a.a.) range (ALA28)(GLN267)
nSSEs in this Concept: 16
String of secondary struct.elems. (SSEs) defining this concept: HEEHHHHHHHHHHEEE
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(ALA28) (SER40) H1
(GLY42) (THR51) E2
(ASP53) (TYR60) E3
(CYS69) (GLU85) H4
(ASN106) (HIS112) H5
(THR118) (SER130) H6
(ASN132) (GLY143) H7
(GLY146) (GLY156) H8
(GLU166) (THR171) H9
(THR182) (LEU193) H10
(GLY200) (ASN214) H11
(ASN214) (SER220) H12
(SER220) (LEU225) H13
(TRP229) (GLY238) E14
(GLY242) (GLY255) E15
(ALA257) (GLN267) E16
Orientation angles° of SSE-pairs; those in contact shown in bold font
H1
E2 149.0° E2
E3 -32.5° -178.2° E3
H4 118.2° 38.2° -141.7° H4
H5 -65.6° 84.9° -96.1° 54.2° H5
H6 84.0° -119.9° 59.9° -157.5° 145.0° H6
H7 -115.7° 64.9° -113.7° 44.8° 79.9° -131.4° H7
H8 -169.1° 40.7° -138.1° 72.7° 125.0° -85.2° 71.3° H8
H9 -103.3° 107.1° -71.8° 133.5° -166.8° -31.9° 99.8° -66.5° H9
H10 113.5° -35.6° 145.9° 34.6° 53.5° -135.8° 79.1° 75.3° -139.6° H10
H11 52.2° -133.8° 47.5° 151.0° 104.0° -41.1° -160.7° -118.6° -72.1° -118.7° H11
H12 97.4° -109.5° 70.0° -144.3° 160.2° 15.2° -118.2° -71.7° -19.0° -133.9° -56.3° H12
H13 132.2° -59.9° 120.3° -97.9° 128.3° -61.3° 111.9° 40.9° 64.2° -78.6° -80.9° -55.3° H13
E14 -37.3° 150.5° -28.6° 114.5° -80.9° 85.1° -87.1° -140.3° -85.8° 133.9° 75.0° 91.4° 146.3° E14
E15 148.4° -22.2° 158.4° 59.3° 97.7° -100.1° 85.1° 35.7° 95.4° -44.2° -112.7° -92.2° -38.8° 172.2° E15
E16 -31.3° 171.3° -7.8° -134.4° -91.7° 66.7° -106.6° -140.7° -75.6° 143.9° 54.8° 75.8° 127.7° -20.9° 166.1°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d3dtma_ : (PRO27) (THR264) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 469008]
d3byda_ : (ASP31) (GLU255) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Klebsiella oxytoca [TaxId: 571]
d1buea_ : (ILE30) (ASN268) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Enterobacter cloacae, NMC-A carbapenemase [TaxId: 550]
d4hbta_ : (THR27) (LYS252) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d3v3sb_ : (GLU20) (LYS261) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1ylyb_ : (ALA28) (GLN267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d4mx4b_ : (ASP21) (THR256) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 287]
d1ymsb_ : (ALA28) (GLN267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d4h8ra_ : (SER19) (LYS261) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1ylzb_ : (ALA28) (GLN267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d3hlwb_ : (SER27) (GLY255) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d1hzoa_ : (ASN27) (GLN267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Proteus vulgaris [TaxId: 585]
d1jtda_ : (THR29) (THR264) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TEM-1 [TaxId: 562]
d3p98a_ : (PRO27) (THR265) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Morganella morganii [TaxId: 582]
d3v3ra_ : (THR26) (LYS261) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
d3c5aa_ : (GLU31) (PRO268) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Escherichia coli [TaxId: 562]
d3w4oa_ : (LYS25) (ASN269) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 272560]
d4h8rb_ : (SER19) (THR258) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Klebsiella pneumoniae [TaxId: 573]
d1bzaa_ : (SER28) (GLN267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Escherichia coli, TOHO-1 [TaxId: 562]
d1ylwa_ : (SER27) (THR266) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d3hreb_ : (ALA28) (GLY255) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d2g2wa1 : (PRO29) (ARG266) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Klebsiella pneumoniae, SHV-1 [TaxId: 573]
d4eqia_ : (PRO26) (LYS267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Serratia fonticola [TaxId: 47917]
d4eqib_ : (PRO25) (LYS267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Serratia fonticola [TaxId: 47917]
d4goga_ : (SER19) (LYS261) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Klebsiella pneumoniae
d1dy6a_ : (SER26) (ARG267) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Serratia marcescens, Sme-1 [TaxId: 615]
d3jyia_ : (HIS26) (THR264) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |automated matches |Escherichia coli [TaxId: 562]
d3sh7a_ : (LYS30) (SER266) [view usage] : e.3.1.1 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |beta-Lactamase/D-ala carboxypeptidase |beta-Lactamase, class A |Bacillus licheniformis [TaxId: 1402]
d3tsga_ : (SER19) (LYS261) [view usage] : e.3.1.0 |beta-lactamase/transpeptidase-like |beta-lactamase/transpeptidase-like |automated matches |automated matches |Acinetobacter baumannii [TaxId: 470]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
e.3