Protein Concepts Dictionary

Tableau information

Concept source:  d4dc1a_  amino acid (a.a.) range (GLU7)(CYS255)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHEHEHHHHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLU7)   (GLY13) E1
	   (ILE18)   (GLY30) H2
	   (ARG32)   (ARG38) E3
	   (GLU40)   (GLY54) H4
	   (GLU56)   (THR61) E5
	   (VAL67)   (GLY82) H6
	   (ASP85)   (ASN89) E7
	  (ALA103)  (LYS127) H8
	  (GLY137)  (ALA143) E9
	  (ALA154)  (LEU175) H10
	  (GLY179)  (PHE189) E11
	  (THR192)  (ASP204) H12
	  (SER209)  (VAL221) H13
	  (PRO229)  (ILE240) H14
	  (PRO242)  (VAL247) H15
	  (ALA249)  (CYS255) E16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                              
H2     -169.2°   H2                                                                                                       
E3      -14.8° -165.8°   E3                                                                                                
H4      146.3°  -28.3°  160.4°   H4                                                                                         
E5      -34.3°  151.8°  -20.5°  177.9°   E5                                                                                  
H6      152.4°  -17.3°  158.9°  -19.5°  161.8°   H6                                                                           
E7      -11.5°  167.0°  -24.5°  138.9°  -41.2°  150.9°   E7                                                                    
H8      169.7°  -15.4°  155.3°  -42.6°  137.1°  -32.3° -175.7°   H8                                                             
E9      -20.8°  155.1°  -35.3°  127.1°  -53.0°  139.4°  -11.9°  169.4°   E9                                                      
H10     159.6°  -30.7°  147.6°  -51.9°  127.0°  -47.9°  157.0°  -18.6° -159.7°   H10                                              
E11     -38.6°  133.6°  -52.9°  107.7°  -72.9°  116.7°  -34.2°  148.9°  -23.4° -157.6°   E11                                       
H12      18.5°  156.9°  -33.1°  129.1°  -51.1°  140.8°   10.2° -171.6°   -2.3° -161.1°  -24.3°   H12                                
H13     121.5°  -68.5°  120.1°  -71.4°  106.6°  -81.0°  113.5°  -62.4°  114.7°  -45.1°  125.3°  116.0°   H13                         
H14     142.6°  -47.4°  130.5°  -68.9°  110.0°  -64.7°  142.5°  -33.4°  150.1°   17.2°  166.2°  150.3°   40.9°   H14                  
H15      58.1° -132.7°   54.3°  133.9°   44.0° -146.8°   54.1° -121.6°   62.0° -103.2°   84.6°   61.8°   65.8°  -88.6°   H15           
E16     -60.4°  110.8°  -73.6°   86.9°  -94.1°   93.6°  -57.4°  126.0°  -46.7°  138.8°  -23.3°  -47.6° -128.7°  155.5°  106.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±5.7°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3qwfa_ :    (LYS19)  (ASP266)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cochliobolus lunatus [TaxId: 5503]
 d1ja9a_ :    (LYS30)  (THR278)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |1,3,6,8-tetrahydroxynaphthalene reductase |Fungus (Magnaporthe grisea) [TaxId: 148305]
 d3wdsa_ :    (ARG10)  (THR254)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium tumefaciens [TaxId: 358]
 d2rh4a_ :     (GLU7)  (CYS255)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |beta-keto acyl carrier protein reductase |Streptomyces coelicolor [TaxId: 1902]
 d1gege_ :     (LYS3)  (ASP250)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |meso-2,3-butanediol dehydrogenase |Klebsiella pneumoniae [TaxId: 573]
 d3o4rc_ :    (LYS33)  (GLY271)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1enza_ :     (ARG9)  (ASP261)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Enoyl-ACP reductase |Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
 d4imra_ :    (ARG12)  (THR250)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Agrobacterium fabrum [TaxId: 176299]
 d1zema1 :     (LYS8)  (ALA260)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Xylitol dehydrogenase |Gluconobacter oxydans [TaxId: 442]
 d3gdfa_ :    (LYS21)  (ASP261)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Cladosporium herbarum [TaxId: 29918]
 d4wecc_ :    (LYS10)  (ASP246)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d3tzqc_ :     (LYS8)  (ASP243)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
 d4dc1a_ :     (GLU7)  (CYS255)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Streptomyces coelicolor [TaxId: 1902]
 d3o4rd_ :    (LYS33)  (GLY271)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1gega_ :     (LYS3)  (ASP250)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |meso-2,3-butanediol dehydrogenase |Klebsiella pneumoniae [TaxId: 573]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2