Protein Concepts Dictionary

Tableau information

Concept source:  d4afna_  amino acid (a.a.) range (VAL7)(SER227)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEEHHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (VAL7)   (THR11) E1
	   (ILE17)   (GLY29) H2
	   (VAL31)   (THR37) E3
	   (SER38)   (GLY53) H4
	   (GLU55)   (VAL60) E5
	   (SER65)   (GLN78) H6
	   (LEU84)   (ASN89) E7
	   (ALA90)   (ASP95) E8
	  (LYS102)  (VAL124) H9
	  (LEU125)  (ALA131) H10
	  (TRP133)  (ILE139) E11
	  (GLN151)  (VAL172) H12
	  (ALA176)  (PHE186) E13
	  (THR189)  (LEU195) H14
	  (GLU197)  (ILE207) H15
	  (ALA215)  (SER227) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                              
H2      173.5°   H2                                                                                                       
E3      -17.9° -166.8°   E3                                                                                                
H4      138.9°  -34.7°  154.0°   H4                                                                                         
E5      -30.6°  155.9°  -17.2°  169.3°   E5                                                                                  
H6      160.5°  -15.4°  156.5°  -32.5°  157.3°   H6                                                                           
E7      -17.8°  155.7°  -33.5°  121.5°  -48.2°  144.9°   E7                                                                    
E8      -16.2°  160.2°  -33.0°  128.2°  -41.2°  158.9°  -19.0°   E8                                                             
H9      171.7°  -14.6°  156.5°  -48.4°  141.8°  -27.4° -169.9° -162.5°   H9                                                      
H10    -155.5°   22.3° -168.3°  -31.9°  154.1°   34.9° -144.8° -139.3°  -26.7°   H10                                              
E11     -19.3°  154.3°  -34.2°  120.5°  -49.4°  142.9°   -2.3°  -21.3°  168.8° -144.9°   E11                                       
H12     156.6°  -28.4°  148.4°  -57.5°  131.4°  -43.0° -165.2°  147.8°  -16.1°  -28.0° -167.0°   H12                                
E13     -38.2°  135.5°  -51.3°  102.8°  -67.5°  124.0°  -20.9°  -38.0°  150.1°  131.2°  -19.0° -159.2°   E13                         
H14      26.3° -147.5°  -43.8°  112.9°  -56.4°  141.1°   12.3°   18.3° -159.3° -132.9°   13.3° -154.0°  -21.6°   H14                  
H15     126.7°  -52.9°  137.2°  -53.3°  127.2°  -66.2°  123.9°  111.2°  -51.8°  -31.3°  125.3°  -42.1° -122.5°  112.1°   H15           
H16     140.1°  -45.4°  131.5°  -74.1°  114.4°  -59.2°  154.2°  135.3°  -31.8°  -43.1°  156.6°   17.2°  167.6°  148.7°   45.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±6.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3gz4b_ :    (ILE12)  (GLY227)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Escherichia coli [TaxId: 217992]
 d3ftpa_ :     (GLN8)  (SER229)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 28450]
 d3pk0d_ :     (ARG7)  (THR230)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d3t7cb_ :     (LYS8)  (VAL257)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]
 d1q7ba_ :     (LYS6)  (ALA223)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |beta-keto acyl carrier protein reductase |Escherichia coli [TaxId: 562]
 d4avya_ :    (GLN11)  (GLY221)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d2p68a_ :     (LYS8)  (SER230)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Aquifex aeolicus [TaxId: 224324]
 d2japc_ :     (LYS8)  (VAL228)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
 d1vl8b_ :    (ARG10)  (SER235)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Gluconate 5-dehydrogenase |Thermotoga maritima [TaxId: 2336]
 d2jahc_ :     (LYS8)  (VAL228)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
 d4n5ma_ :     (ARG4)  (SER226)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Ralstonia eutropha [TaxId: 381666]
 d4jp2a_ :     (LYS4)  (ARG212)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Thermus thermophilus HB8 [TaxId: 300852]
 d3tzqd_ :     (LYS8)  (SER229)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium marinum [TaxId: 216594]
 d3rkua_ :    (LYS14)  (SER241)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d1ydeg_ :    (LYS10)  (ALA232)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3v2ga_ :    (LYS32)  (ALA251)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Sinorhizobium meliloti [TaxId: 266834]
 d1ydea1 :    (LYS10)  (ALA232)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Retinal dehydrogenase/reductase 3 |Human (Homo sapiens) [TaxId: 9606]
 d1ydem_ :    (LYS10)  (ALA232)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2jaha_ :     (LYS8)  (VAL228)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
 d4k6ca_ :     (LYS3)  (SER227)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Burkholderia cenocepacia [TaxId: 216591]
 d3tzhc_ :    (LYS10)  (ALA227)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 593588]
 d3lf2c_ :     (ALA9)  (LEU242)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d2cfca_ :     (MET1)  (GLY230)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Xanthobacter autotrophicus [TaxId: 78245]
 d3tzha_ :    (LYS10)  (ALA227)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 593588]
 d3pk0a_ :     (ARG7)  (THR230)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d4ag3b_ :     (LYS6)  (ALA226)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d2japa_ :     (LYS8)  (VAL228)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces clavuligerus [TaxId: 1901]
 d1vl8a_ :    (ARG10)  (SER235)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |Gluconate 5-dehydrogenase |Thermotoga maritima [TaxId: 2336]
 d3tzka_ :    (LYS10)  (SER228)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 593588]
 d3u09a_ :    (LYS10)  (ALA227)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Vibrio cholerae [TaxId: 243277]
 d4ag3a_ :     (VAL7)  (SER227)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3lf2b_ :     (ALA9)  (ALA243)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d1ahha_ :    (LYS12)  (SER233)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |7-alpha-hydroxysteroid dehydrogenase |Escherichia coli [TaxId: 562]
 d4ospa_ :     (LYS7)  (GLY233)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Streptomyces fradiae [TaxId: 1906]
 d4afna_ :     (VAL7)  (SER227)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Pseudomonas aeruginosa [TaxId: 208964]
 d3pk0b_ :     (ARG7)  (THR230)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium smegmatis [TaxId: 246196]
 d3p19a_ :     (LYS3)  (TYR219)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Vibrio vulnificus [TaxId: 672]
 d1ydei_ :    (LYS10)  (ALA232)   [view usage] : c.2.1.2 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |Tyrosine-dependent oxidoreductases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3t7ca_ :     (LYS8)  (VAL257)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Mycobacterium avium [TaxId: 243243]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2