Protein Concepts Dictionary

Tableau information

Concept source:  d1qmgc2  amino acid (a.a.) range (LYS94)(GLY265)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: EEHHEHEHHEHHEHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LYS94)   (THR99) E1
	  (GLY102)  (ARG112) E2
	  (ARG112)  (LEU117) H3
	  (LEU117)  (LYS123) H4
	  (LYS126)  (GLY132) E5
	  (GLY134)  (LYS152) H6
	  (VAL157)  (ARG162) E7
	  (SER167)  (GLY175) H8
	  (MET186)  (GLY192) H9
	  (ASP194)  (LEU199) E10
	  (SER201)  (ASP207) H11
	  (TYR209)  (MET216) H12
	  (SER220)  (HIS226) E13
	  (PHE228)  (GLY237) H14
	  (SER245)  (PRO251) E15
	  (MET254)  (GLY265) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                              
E2      142.0°   E2                                                                                                       
H3     -133.1°  -83.2°   H3                                                                                                
H4      -87.9° -118.2°   49.8°   H4                                                                                         
E5       50.0° -103.4°  125.8°   82.4°   E5                                                                                  
H6      127.4°   66.6°  -72.4° -118.1° -159.4°   H6                                                                           
E7      -77.0°  -99.1°   85.5°   48.6°  -40.3° -154.6°   E7                                                                    
H8      108.0°  -68.4°  -99.7° -143.3°  133.2°  -27.3° -165.5°   H8                                                             
H9     -101.2°  105.3°   65.8°  -90.8° -150.3°   40.1° -139.2°   54.3°   H9                                                      
E10      40.1° -105.0°  145.0°   98.6°  -19.6°  142.3°  -59.8°  115.0° -139.0°   E10                                              
H11    -113.2°  100.4°   21.2°  -28.9°  109.2°  -90.6°   70.7° -117.6°  -73.0° -126.9°   H11                                       
H12    -141.4°   65.9°  -51.0°  -98.6°  168.4°  -21.6°  134.1°  -48.7°  -41.2°  162.8°  -70.1°   H12                                
E13      31.0° -111.0°  159.2°  109.4°  -38.0°  126.6°  -77.5°   99.7°  121.4°  -19.0° -138.1°  148.1°   E13                         
H14     -78.9°  126.6°   57.8°    9.1°   77.7° -122.8°   48.1° -145.5°  -91.3°   92.3°  -36.6° -104.8° -101.5°   H14                  
E15      60.3°  -83.6° -166.6° -140.6°  -59.8°  100.3°  -98.6°   73.4°  116.1°  -42.2° -169.0°  120.7°  -32.5° -133.6°   E15           
H16     114.2°  -62.4°  -96.0°  142.4° -135.2°   24.4° -160.9°   -6.6°   56.4° -118.1°  115.0°   45.1°  104.0° -146.2°   76.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1qmga2 :    (LYS94)  (GLY265)   [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Class II ketol-acid reductoisomerase (KARI) |Spinach (Spinacia oleracea) [TaxId: 3562]
 d1qmgc2 :    (LYS94)  (GLY265)   [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Class II ketol-acid reductoisomerase (KARI) |Spinach (Spinacia oleracea) [TaxId: 3562]
 d3fr7a1 :    (GLU96)  (GLY265)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Oryza sativa [TaxId: 39947]
 d1qmgd2 :    (LYS94)  (GLY265)   [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Class II ketol-acid reductoisomerase (KARI) |Spinach (Spinacia oleracea) [TaxId: 3562]
 d3fr8a1 :    (ASN94)  (GLY265)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Oryza sativa [TaxId: 39947]
 d3fr8b1 :    (ASN94)  (GLY265)   [view usage] : c.2.1.0 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |automated matches |automated matches |Oryza sativa [TaxId: 39947]
 d1qmgb2 :    (GLU96)  (GLY265)   [view usage] : c.2.1.6 |NAD(P)-binding Rossmann-fold domains |NAD(P)-binding Rossmann-fold domains |6-phosphogluconate dehydrogenase-like, N-terminal domain |Class II ketol-acid reductoisomerase (KARI) |Spinach (Spinacia oleracea) [TaxId: 3562]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.2