Protein Concepts Dictionary

Tableau information

Concept source:  d1ipka1  amino acid (a.a.) range (LEU22)(VAL172)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: EEHHEEEEEEEEEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (LEU22)   (GLN26) E1
	   (ASN27)   (LEU33) E2
	   (ARG35)   (SER40) H3
	   (GLU44)   (TYR49) H4
	   (ILE51)   (LYS57) E5
	   (PRO58)   (ASP68) E6
	   (LEU72)   (SER77) E7
	   (ILE81)   (ASN87) E8
	   (ASP89)   (ASN94) E9
	   (GLY98)  (PRO104) E10
	  (THR108)  (ASN113) E11
	  (ASN119)  (LEU125) E12
	  (GLY133)  (PHE139) E13
	  (SER148)  (SER154) H14
	  (SER154)  (HIS163) H15
	  (PHE166)  (VAL172) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                              
E2     -157.4°   E2                                                                                                       
H3     -114.8°  -47.0°   H3                                                                                                
H4       48.9° -153.6° -150.7°   H4                                                                                         
E5       14.1°  171.3°  125.3°   35.1°   E5                                                                                  
E6      162.4°  -40.1°   79.3° -113.7°  148.3°   E6                                                                           
E7      -25.2°  132.3°   91.6°  -74.0°  -39.0°  170.8°   E7                                                                    
E8      129.9°  -72.7°  108.2°   81.1°  115.9°  -32.6°  154.6°   E8                                                             
E9      -58.8°   98.6°   65.0° -107.6°  -72.9°  138.7°  -34.3°  171.2°   E9                                                      
E10     129.9°  -71.6°  -98.9°   83.7°  116.1°  -33.2°  150.2°   14.7° -163.0°   E10                                              
E11     -37.1°  120.3°  -84.0°  -85.8°  -51.2°  160.4°  -13.5°  166.8°  -21.8° -163.1°   E11                                       
E12     175.0°  -25.2°  -69.5°  128.5°  163.6°  -16.5°  157.3°  -48.1°  123.1°  -49.7°  144.5°   E12                                
E13      43.8° -158.7° -144.0°    7.2°  -29.7°  118.6°  -68.6°   86.2° -102.6°   87.3°  -80.9°  134.1°   E13                         
H14     127.3°  -71.6°   90.1°  -86.5°  114.8°  -38.4°  141.9°  -28.1°  150.8°  -13.4° -152.5°  -53.8°  -88.5°   H14                  
H15     -69.7°  118.0°  149.0°  -56.4°  -66.1°  104.0°  -84.3°   86.3°  -97.1°   99.7°  -85.3°  105.3°  -61.6°  111.8°   H15           
H16     -59.9°   98.4°  -72.2°  106.5°   73.8° -137.4°   37.9°  164.0°  -12.3° -169.8°   24.4° -120.9°  102.8° -161.6°   86.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1ipkc1 :    (LEU22)  (VAL172)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
 d1ipka1 :    (LEU22)  (VAL172)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
 d1cava_ :    (LEU59)  (GLN208)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]
 d1ipjc1 :    (LEU23)  (VAL173)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
 d2phla1 :    (LEU25)  (VAL180)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]
 d1ipjb1 :    (LEU23)  (VAL173)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]
 d2phlc1 :    (LEU25)  (VAL180)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Seed storage 7S protein |French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82