Protein Concepts Dictionary

Tableau information

Concept source:  d2h8za_  amino acid (a.a.) range (GLU6)(ARG209)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEHHEEEEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLU6)   (LYS11) E1
	   (ASP12)   (ARG16) E2
	   (ARG18)   (TYR27) E3
	   (ASP36)   (GLY48) H4
	   (GLY51)   (VAL55) E5
	   (GLU56)   (ALA61) E6
	   (SER75)   (ALA81) H7
	   (PHE82)   (GLY93) H8
	   (VAL95)  (ALA101) E9
	  (TRP127)  (PRO132) E10
	  (ALA134)  (GLY138) E11
	  (LYS143)  (THR149) E12
	  (THR149)  (ALA170) H13
	  (GLU173)  (LEU177) E14
	  (LEU184)  (SER190) H15
	  (SER203)  (ARG209) H16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                              
E2      165.3°   E2                                                                                                       
E3      -72.3°   93.3°   E3                                                                                                
H4     -120.5°   74.2°  165.3°   H4                                                                                         
E5       57.3°  108.9°  -17.6°  164.4°   E5                                                                                  
E6       22.2°  144.1°  -51.2° -140.0°   35.3°   E6                                                                           
H7     -152.5°   38.6°  128.0°  -43.5°  145.3°  169.5°   H7                                                                    
H8     -131.4°   62.9°  156.1°  -14.2°  169.8° -152.7°   29.4°   H8                                                             
E9       61.9° -109.6°  -43.7°  133.0°  -31.5°  -43.6°  145.1°  142.6°   E9                                                      
E10      76.4° -116.6° -130.6°  -53.1°  114.3°   89.5°  -96.2°  -67.3°   87.9°   E10                                              
E11    -170.2°   -9.1°  -98.9°   67.7° -113.2° -148.1°   37.1°   57.7° -108.8°  107.6°   E11                                       
E12      34.6° -158.9°  106.6°  -86.9°   91.9°   56.6° -120.4°  -96.9°   90.0°  -54.6°  154.5°   E12                                
H13    -119.4°   65.7°  122.4°  -59.8°  135.7°  133.2°  -36.6°  -48.5°  166.1° -106.0°  -68.6°  -97.0°   H13                         
E14      78.4°  -97.0°  -60.0°  113.0°  -51.8°  -63.6°  126.3°  121.0°  -22.0°  -77.1°   93.6°  -98.9°  162.1°   E14                  
H15      76.7° -109.5° -100.3°   77.3°  -87.4°   77.4° -112.1°  -89.8°   56.8°  -34.7°  101.3°  -74.3° -136.8°  -42.6°   H15           
H16     -95.7°   77.0°   73.6° -110.0°   85.4°   94.2°  -76.3°  -98.0°  116.5°  147.5°  -85.5°  101.7°   50.3°  132.9°  171.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3l65a_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d3l66a_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d1ps9a1 :     (ALA7)  (ARG192)   [view usage] : c.1.4.1 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |FMN-linked oxidoreductases |2,4-dienoyl-CoA reductase, N-terminal domain |Escherichia coli [TaxId: 562]
 d2h8za_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d3l67a_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d3n16a_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d2h8xa_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]
 d3n14a_ :     (GLU6)  (ARG209)   [view usage] : c.1.4.0 |TIM beta/alpha-barrel |FMN-linked oxidoreductases |automated matches |automated matches |Pseudomonas putida [TaxId: 303]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1