Protein Concepts Dictionary

Tableau information

Concept source:  d3ensb_  amino acid (a.a.) range (TRP29)(THR229)

nSSEs in this Concept: 16

String of secondary struct.elems. (SSEs) defining this concept: EEEHEEEEHEEHEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (TRP29)   (ASN35) E1
	   (CYS42)   (SER48) E2
	   (PHE50)   (THR54) E3
	   (ALA55)   (GLN61) H4
	   (ARG63)   (GLY69) E5
	   (GLY79)   (GLU84) E6
	   (GLU86)   (HIS91) E7
	  (ASP102)  (LEU108) E8
	  (ARG125)  (GLN133) H9
	  (LYS134)  (GLY140) E10
	  (LEU155)  (ASP164) E11
	  (ARG165)  (SER172) H12
	  (ASN179)  (TYR185) E13
	  (HIS199)  (LYS204) E14
	  (ASP205)  (VAL209) E15
	  (GLY223)  (THR229) E16

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                              
E2      134.2°   E2                                                                                                       
E3      -73.5°  145.9°   E3                                                                                                
H4       28.9° -119.9°   93.7°   H4                                                                                         
E5      148.5°  -61.5°  106.7°  123.1°   E5                                                                                  
E6      -54.5°   97.5°  -84.1°  -76.1°  156.1°   E6                                                                           
E7     -102.2°  104.1°  -43.1° -129.8°   97.6°  -75.5°   E7                                                                    
E8       90.2°  -57.5°  155.7°   65.3°  -77.8°  101.3°  161.2°   E8                                                             
H9      -90.8°  130.3°  -49.7°   88.3°   68.8° -130.4°  -79.9°  114.4°   H9                                                      
E10     -37.7°  109.7° -104.1°  -10.5°  117.4°  -79.0° -139.7°   54.9°  -94.0°   E10                                              
E11     108.7°  -88.4°   60.2°  137.5°  -97.6°   68.8°   17.8° -143.8°  -96.4°  144.9°   E11                                       
H12     -21.1° -155.3°   54.7°   40.1°  137.1°  -66.5°  -90.4°  105.4°   71.4°  -50.6°  102.0°   H12                                
E13    -101.6°  112.5°  -70.4°  -89.6°   52.0° -150.0°  -95.0°   96.3°   20.9°  -91.8°  109.1°   85.4°   E13                         
E14    -165.9°   38.6°  118.5° -137.5°  -25.9°  130.3°   91.9°  -76.0°   92.4°  128.3°  -84.6°  162.9°   77.5°   E14                  
E15      34.7° -117.6°   72.1°  -60.5° -176.5°  -21.5°  -79.2° -104.7° -111.9°  -66.1°   78.9°  -45.0° -129.5°  151.8°   E15           
E16      90.6°  -43.8°  148.5°  -83.5° -101.0°   64.7°  119.0°  -45.9°  160.3°   75.4° -101.7° -111.6°  140.7°  -81.9°   79.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2vwla_ :    (GLN30)  (GLU217)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ensb_ :    (TRP29)  (THR229)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1cvwh_ :    (GLN30)  (THR229)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor VIIa |Human (Homo sapiens) [TaxId: 9606]
 d1os8a_ :    (PHE29)  (THR229)   [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Trypsin |Streptomyces griseus, strain k1 [TaxId: 1911]
 d2jkha_ :    (GLN30)  (GLU217)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2vvca_ :    (TRP29)  (GLU217)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1mq5a_ :    (TRP29)  (GLU217)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Human (Homo sapiens) [TaxId: 9606]
 d1ossa_ :    (PHE29)  (THR229)   [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Trypsin |Streptomyces griseus, strain k1 [TaxId: 1911]
 d2gd4h1 :    (TRP29)  (THR229)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Human (Homo sapiens) [TaxId: 9606]
 d1autc_ :    (GLN30)  (THR229)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Activated protein c (autoprothrombin IIa) |Human (Homo sapiens) [TaxId: 9606]
 d1ezqa_ :    (TRP29)  (GLU217)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Human (Homo sapiens) [TaxId: 9606]
 d2gd4b1 :    (TRP29)  (THR229)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Human (Homo sapiens) [TaxId: 9606]
 d2fmja_ :    (PHE29)  (THR229)   [view usage] : b.47.1.1 |Trypsin-like serine proteases |Trypsin-like serine proteases |Prokaryotic proteases |Trypsin |Streptomyces griseus, strain k1 [TaxId: 1911]
 d1c5md_ :    (TRP29)  (GLU217)   [view usage] : b.47.1.2 |Trypsin-like serine proteases |Trypsin-like serine proteases |Eukaryotic proteases |Coagulation factor Xa, protease domain |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.47