Protein Concepts Dictionary

Tableau information

Concept source:  d3amca_  amino acid (a.a.) range (ASP4)(HIS205)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: HEHHHEHEHHEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (ASP4)   (GLY13) H1
	   (GLY13)   (GLY19) E2
	   (GLY19)   (ALA24) H3
	   (ASN26)   (GLY31) H4
	   (GLU37)   (GLY46) H5
	   (SER48)   (ILE54) E6
	   (ASP70)   (LYS85) H7
	   (ALA89)   (ILE94) E8
	   (GLU98)  (ASP103) H9
	  (HIS107)  (TYR122) H10
	  (THR128)  (LEU134) E11
	  (PRO143)  (ASP161) H12
	  (HIS164)  (THR170) E13
	  (ASN190)  (PRO200) E14
	  (PRO200)  (HIS205) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                       
E2       64.8°   E2                                                                                                
H3      112.1°  -49.9°   H3                                                                                         
H4      -53.1°   94.2°  137.3°   H4                                                                                  
H5      101.4°  148.9° -144.1°   57.6°   H5                                                                           
E6      -95.1°  -30.6°  -26.2°  111.1°  142.6°   E6                                                                    
H7       81.3°  145.8° -162.5°  -59.7°  -32.0°  170.5°   H7                                                             
E8     -102.1°  -41.1°  -34.0°  104.5°  127.5°  -15.1°  157.8°   E8                                                      
H9     -140.0°  -92.5°  -65.3°   99.9°  -81.0°   65.2° -112.3°   51.8°   H9                                               
H10      77.3°  122.5°  121.7°  -95.7°  -77.1°  139.7°  -48.1°  154.1° -140.3°   H10                                       
E11    -100.3°  -53.2°  -55.8°   85.4°  106.9°  -36.5°  135.4°  -22.6°  -43.1°  175.7°   E11                                
H12      93.2°  106.1°   88.8° -127.9° -102.2°  110.2°  -78.8°  122.4°  125.6°  -33.2°  144.6°   H12                         
E13     -84.0°  -68.4°  -87.9°   53.5°   83.0°  -65.5°  105.3°  -54.0°  -56.5°  149.2°  -32.5°  174.5°   E13                  
E14     -46.4°  -64.4° -107.9°   30.4°   85.8°  -81.7°   89.6°  -77.9°  -94.8°  115.9°  -63.5°  139.4°  -38.4°   E14           
H15      40.3°  -54.4°  -83.2°   93.4°  132.3°  -80.1°  102.1°  -93.9° -145.3°   68.5° -107.3°   64.3° -110.9°   80.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3amca_ :     (ASP4)  (HIS205)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3amcb_ :     (PRO5)  (HIS205)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3amdc_ :     (ASP4)  (HIS205)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3amda_ :     (PRO5)  (ASN245)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3aofa_ :     (ASP4)  (HIS205)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3amdb_ :     (PRO5)  (ASN245)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3azrb_ :     (ASP4)  (HIS205)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1