Protein Concepts Dictionary

Tableau information

Concept source:  d2gsja_  amino acid (a.a.) range (CYS57)(ILE267)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: HEHEHEHEHEHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (CYS57)   (GLY71) H1
	   (LYS73)   (GLY79) E2
	   (SER89)  (LEU105) H3
	  (ASP120)  (ILE126) E4
	  (TYR132)  (GLY146) H5
	  (LYS148)  (ALA154) E6
	  (ASP162)  (SER170) H7
	  (ASP175)  (PHE181) E8
	  (PRO194)  (PHE208) H9
	  (LYS211)  (PRO217) E10
	  (PRO229)  (ILE234) H11
	  (ILE234)  (PRO245) H12
	  (GLY249)  (ASP254) E13
	  (ARG255)  (THR261) H14
	  (LYS262)  (ILE267) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                       
E2      137.6°   E2                                                                                                
H3      -76.7°  141.4°   H3                                                                                         
E4      114.5°  -28.3°  139.0°   E4                                                                                  
H5      -58.2°  156.6°  -44.1° -172.5°   H5                                                                           
E6       96.2°  -53.5°  119.7°  -25.8° -149.9°   E6                                                                    
H7      -59.6°  126.2°  -82.8°  137.8°  -38.7° -143.9°   H7                                                             
E8      106.1°  -57.9°  102.1°  -37.5°  142.8°  -22.1° -163.8°   E8                                                      
H9      -86.5°  103.6°  -93.9°  125.0°  -55.5°  146.1°  -27.4°  161.5°   H9                                               
E10     127.6°  -61.3°   84.4°  -57.0°  127.9°  -53.0°  163.0°  -32.0°  143.9°   E10                                       
H11     -37.5°  117.2° -101.2°  110.6°  -62.8°  107.8°  -36.6°  127.5°  -56.7°  158.9°   H11                                
H12     -72.8°  100.9° -108.0°  113.0°  -64.4°  127.1°  -26.0°  148.5°  -23.2°  159.0°  -37.4°   H12                         
E13     156.4°  -55.1°   86.5°  -68.5°  118.7°  -77.7°  135.1°  -61.0°  111.4°  -32.5°  165.9°  129.0°   E13                  
H14      59.9°  120.0°  -54.1°   95.8°  -82.0°   70.5° -111.1°   62.0° -136.3°   69.3°  -97.3° -131.7°   96.8°   H14           
H15     -12.8°  129.4°  -87.5°  110.8°  -61.8°   97.0°  -53.3°  111.1°  -78.6°  137.1°  -25.5°  -62.1°  168.6°   71.9°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.5°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3o9na_ :    (SER52)  (LEU268)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Scadoxus multiflorus [TaxId: 82246]
 d2ffia1 :    (ASN69)  (LEU258)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 |Pseudomonas putida [TaxId: 303]
 d2gsja_ :    (CYS57)  (ILE267)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |automated matches |Parkia platycephala [TaxId: 185447]
 d1kr1a_ :    (GLY55)  (ILE269)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Hevamine A (chitinase/lysozyme) |Rubber tree (Hevea brasiliensis) [TaxId: 3981]
 d4i6ka_ :    (GLN61)  (VAL249)   [view usage] : c.1.9.0 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |automated matches |automated matches |Acinetobacter baumannii [TaxId: 480119]
 d1nara_ :    (PRO65)  (ALA288)   [view usage] : c.1.8.5 |TIM beta/alpha-barrel |(Trans)glycosidases |Type II chitinase |Seed storage protein |Vicia narbonensis, Narbonin [TaxId: 3912]
 d2zvid2 :   (PRO188)  (ALA388)   [view usage] : c.1.14.0 |TIM beta/alpha-barrel |RuBisCo, C-terminal domain |automated matches |automated matches |Bacillus subtilis [TaxId: 1423]
 d2ffib_ :    (ASN69)  (LEU258)   [view usage] : c.1.9.15 |TIM beta/alpha-barrel |Metallo-dependent hydrolases |PP1699/LP2961-like |Putative 2-pyrone-4,6-dicarboxylic acid hydrolase PP1699 |Pseudomonas putida [TaxId: 303]
 d3mu7a_ :    (SER52)  (LEU269)   [view usage] : c.1.8.0 |TIM beta/alpha-barrel |(Trans)glycosidases |automated matches |automated matches |Scadoxus multiflorus [TaxId: 82246]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1