Protein Concepts Dictionary

Tableau information

Concept source:  d1yjxb_  amino acid (a.a.) range (TYR4)(LEU208)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EHHEHEHHHHHHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (TYR4)   (ARG10) E1
	   (SER14)   (ASN20) H2
	   (SER31)   (GLY49) H3
	   (ASP53)   (SER58) E4
	   (ALA63)   (ASP75) H5
	   (PRO80)   (TRP85) E6
	   (TYR92)   (LEU98) H7
	  (LYS100)  (LYS106) H8
	  (GLU109)  (TRP115) H9
	  (TYR133)  (ALA143) H10
	  (SER155)  (ASN168) H11
	  (ASN168)  (GLY178) H12
	  (ARG180)  (ALA184) E13
	  (HIS186)  (LEU197) H14
	  (SER201)  (LEU208) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
H2      -51.3°   H2                                                                                                
H3      162.3°  124.7°   H3                                                                                         
E4      -33.9°   48.2°  160.5°   E4                                                                                  
H5      126.3° -119.8°  -37.1°  159.4°   H5                                                                           
E6      -50.3°   46.1°  143.0°  -17.5°  165.7°   E6                                                                    
H7       50.9°   70.0°  111.7°  -83.9°   75.7°  -98.1°   H7                                                             
H8       73.4°  -48.1°  118.0°   42.6° -147.5°   25.2°  114.9°   H8                                                      
H9      144.3° -164.1°  -42.2°  139.6°  -57.2°  135.2° -120.5°  124.5°   H9                                               
H10     147.2° -161.2°  -37.3° -145.5°   51.6° -140.4°  117.3° -127.7°   -5.8°   H10                                       
H11     141.1° -161.9°  -38.5°  149.8°  -44.2°  148.9° -107.2°  137.9°  -14.2°   10.1°   H11                                
H12     137.3° -114.2°  -25.0° -162.2°   16.7° -154.0°   86.9° -131.2°  -57.9°   52.1°  -47.9°   H12                         
E13     -10.5°   46.6°  168.7°  -23.7°  136.1°  -39.8°  -60.4°   63.1°  147.8°  152.1°  148.5° -145.3°   E13                  
H14    -151.6° -102.2°   37.4°  123.1°  -72.7°  105.6°  137.2°  -80.7°  -62.0°  -60.3°  -67.2°  -57.1° -142.6°   H14           
H15     -57.4°  -85.7°  106.9°  -91.2°   69.8° -107.5°  -16.3° -128.0°  106.0°  103.7°   93.7°   84.0°  -67.8°  140.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1yjxh_ :     (TYR4)  (LEU208)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yjxa_ :     (TYR4)  (GLU207)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yjxe_ :     (TYR4)  (LEU208)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yjxj_ :     (TYR4)  (GLU207)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1yjxk_ :     (TYR4)  (LEU208)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3ezna_ :     (TYR2)  (GLY203)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d1yjxb_ :     (TYR4)  (LEU208)   [view usage] : c.60.1.1 |Phosphoglycerate mutase-like |Phosphoglycerate mutase-like |Cofactor-dependent phosphoglycerate mutase |automated matches |Human (Homo sapiens) [TaxId: 9606]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.60