Protein Concepts Dictionary

Tableau information

Concept source:  d3bara_  amino acid (a.a.) range (PRO132)(MET321)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHHHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (PRO132)  (MET137) E1
	  (ILE142)  (LYS158) H2
	  (CYS162)  (TYR167) E3
	  (GLY169)  (ASN183) H4
	  (ASN183)  (LYS193) E5
	  (ASN196)  (LEU206) H6
	  (ALA213)  (ASN229) H7
	  (ASN229)  (ASN234) H8
	  (PHE236)  (GLY242) E9
	  (TYR246)  (PRO257) H10
	  (TYR260)  (GLY265) E11
	  (GLY265)  (ASN270) H12
	  (LEU273)  (GLY280) H13
	  (ILE288)  (ARG294) E14
	  (PRO302)  (MET321) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
H2      142.8°   H2                                                                                                
E3      -39.2°  164.1°   E3                                                                                         
H4      128.1°  -53.7°  141.6°   H4                                                                                  
E5      -61.6°  108.3°  -56.8°  161.4°   E5                                                                           
H6       83.6° -133.1°   52.7°  -96.7° -100.4°   H6                                                                    
H7      123.7°  -70.4°  123.5°  -20.2° -173.0°   76.6°   H7                                                             
H8      143.3°   -6.0° -170.0°   47.8° -114.2° -130.7°   64.9°   H8                                                      
E9      -63.3°   94.5°  -72.9°  142.1°  -21.5° -121.2°  162.2°  -99.6°   E9                                               
H10     122.6°  -89.1°   99.4°  -53.3°  139.3°   46.8°  -35.0°  -85.4° -159.1°   H10                                       
E11     -62.0°   86.3°  -84.9°  123.9°  -42.3° -137.3°  142.9°   90.1°  -21.4° -175.3°   E11                                
H12     -55.4°   97.2°  -72.3°  137.7°  -29.5° -124.0°  156.3°  101.7°  -11.5° -168.7°   13.8°   H12                         
H13     107.6° -105.7°   82.6°  -67.5°  128.0°   30.3°  -47.7° -102.2°  149.5°  -16.8°  167.5°  154.2°   H13                  
E14     -64.3°   78.4° -100.4°   96.4°  -72.9°  146.7°  113.0°   79.4°  -52.8°  147.7°  -31.6°  -43.5°  152.9°   E14           
H15     107.0° -107.2°   67.8° -105.2°   83.9°  -39.7°  -89.9° -108.6°  103.9°  -55.5°  125.2°  113.4°  -48.7°  156.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2aqwa1 :   (PRO135)  (ASP322)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium yoelii [TaxId: 5861]
 d2q8zb_ :   (PRO132)  (ASN320)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
 d2q8za_ :   (PRO132)  (SER323)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
 d3bpwb_ :   (PRO132)  (ASN320)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
 d3n2ma_ :   (LYS138)  (ASN320)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Plasmodium falciparum [TaxId: 36329]
 d3bara_ :   (PRO132)  (MET321)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
 d2qafa_ :   (PRO132)  (MET321)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |Protozoan orotidine monophosphate decarboxylase |Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
 d2za1a_ :   (LYS138)  (ASN299)   [view usage] : c.1.2.3 |TIM beta/alpha-barrel |Ribulose-phoshate binding barrel |Decarboxylase |automated matches |Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1