Protein Concepts Dictionary

Tableau information

Concept source:  d3r0ka2  amino acid (a.a.) range (ASN130)(GLU315)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHEHEHHEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (ASN130)  (SER139) E1
	  (VAL143)  (ASN157) H2
	  (THR159)  (THR165) E3
	  (PHE169)  (ASN181) H4
	  (LYS188)  (ASN194) E5
	  (ASN198)  (LYS211) H6
	  (GLU217)  (VAL223) E7
	  (ILE228)  (PHE237) H8
	  (PRO241)  (ASP245) E9
	  (ALA251)  (GLN261) H10
	  (ASN264)  (LYS269) E11
	  (LYS269)  (GLY274) H12
	  (ILE276)  (GLY290) H13
	  (GLY290)  (MSE298) E14
	  (PRO302)  (GLU315) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
H2      159.5°   H2                                                                                                
E3      -38.1°  157.2°   E3                                                                                         
H4      119.9°  -46.5°  156.2°   H4                                                                                  
E5      -59.3°  132.7°  -24.8°  175.2°   E5                                                                           
H6      107.9°  -58.5°  144.2°  -12.2°  166.8°   H6                                                                    
E7      -56.8°  136.2°  -21.0°  176.5°    4.3°  164.7°   E7                                                             
H8      104.7°  -67.4°  134.3°  -24.8°  158.3°  -18.6°  154.1°   H8                                                      
E9      -82.0°   99.4°  -61.8°  135.3°  -40.7°  140.4°  -44.9°  159.0°   E9                                               
H10      77.3° -107.8°   88.4°  -74.9°  108.9°  -68.3°  104.7°  -50.4°  149.5°   H10                                       
E11     -92.6°   78.9°  -88.5°  103.9°  -71.7°  108.1°  -75.7°  126.6°  -32.4°  167.0°   E11                                
H12      97.6°   99.1°   59.6° -141.8°   40.3° -152.7°   41.7° -143.7°   51.5°  109.4°  -79.7°   H12                         
H13      92.6°  -94.1°   99.5°  -68.0°  116.4°  -64.4°  112.4°  -45.8°  155.1°  -15.5° -171.9°  105.7°   H13                  
E14     -65.8°  100.3°  -76.4°  104.2°  -71.0°  101.9°  -73.6°  117.9°  -46.2°  136.9°  -30.3°   97.3°  150.5°   E14           
H15     127.1°  -65.6°  117.2°  -65.2°  119.3°  -69.8°  117.4°  -56.4°  134.7°  -52.0°  139.6°   87.2°  -36.8° -165.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±9.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3bofa1 :   (GLU355)  (GLU556)   [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
 d3i6ta2 :   (PRO137)  (THR315)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Jannaschia sp. [TaxId: 290400]
 d4hgxa_ :     (ARG8)  (GLY237)   [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Putative cytoplasmic protein STM4435 |Salmonella typhimurium [TaxId: 90371]
 d3r0ka2 :   (ASN130)  (GLU315)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Francisella philomiragia [TaxId: 484022]
 d2pcea2 :   (PRO134)  (THR317)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
 d4hnca2 :   (GLN135)  (THR310)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |automated matches |Pseudomonas putida [TaxId: 303]
 d1q85a1 :   (GLU355)  (GLU556)   [view usage] : c.1.21.2 |TIM beta/alpha-barrel |Dihydropteroate synthetase-like |Methyltetrahydrofolate-utiluzing methyltransferases |Cobalamin-dependent methionine synthase MetH, C-terminal domain |Thermotoga maritima [TaxId: 2336]
 d3gk0c_ :    (ALA10)  (LEU213)   [view usage] : c.1.24.0 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d3gk0d_ :    (ILE11)  (LEU213)   [view usage] : c.1.24.0 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d3gk0e_ :    (ASP12)  (LEU213)   [view usage] : c.1.24.0 |TIM beta/alpha-barrel |Pyridoxine 5'-phosphate synthase |automated matches |automated matches |Burkholderia pseudomallei [TaxId: 320372]
 d3fv9b2 :   (PRO134)  (THR317)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
 d3fv9a2 :   (PRO134)  (THR317)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Roseovarius nubinhibens [TaxId: 89187]
 d2q02a1 :     (ARG7)  (GLY236)   [view usage] : c.1.15.4 |TIM beta/alpha-barrel |Xylose isomerase-like |IolI-like |Putative cytoplasmic protein STM4435 |Salmonella typhimurium [TaxId: 90371]
 d3r0kb2 :   (ASN130)  (GLU315)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Francisella philomiragia [TaxId: 484022]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1