Protein Concepts Dictionary

Tableau information

Concept source:  d1jpmc1  amino acid (a.a.) range (LEU130)(PHE322)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EHEHEHEHEHEHEHE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU130)  (VAL136) E1
	  (SER140)  (GLY155) H2
	  (GLN157)  (LYS162) E3
	  (ASP167)  (ARG181) H4
	  (VAL186)  (ALA192) E5
	  (ARG197)  (GLY212) H6
	  (GLU216)  (GLN220) E7
	  (ASP226)  (ALA236) H8
	  (PRO240)  (ASP244) E9
	  (THR249)  (ARG260) H10
	  (ASP263)  (LEU269) E11
	  (GLY277)  (GLY289) H12
	  (GLY289)  (MET297) E13
	  (LEU302)  (LYS314) H14
	  (THR318)  (PHE322) E15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
H2      156.4°   H2                                                                                                
E3      -48.9°  146.8°   E3                                                                                         
H4      124.0°  -37.0°  170.2°   H4                                                                                  
E5      -65.3°  130.1°  -16.9°  164.9°   E5                                                                           
H6       98.9°  -65.8°  146.9°  -29.6°  163.9°   H6                                                                    
E7      -73.1°  120.0°  -26.8°  154.0°  -11.0°  170.7°   E7                                                             
H8       97.8°  -74.3°  137.7°  -43.6°  151.3°  -20.6°  162.0°   H8                                                      
E9      -86.0°   93.5°  -58.9°  117.0°  -49.0°  137.3°  -39.4°  157.8°   E9                                               
H10      84.9° -103.1°   99.8°  -85.3°  108.2°  -65.1°  117.7°  -44.8°  157.1°   H10                                       
E11     -95.1°   75.0°  -83.9°   90.5°  -76.2°  110.0°  -66.9°  130.4°  -27.6° -175.0°   E11                                
H12      98.6°  -89.9°  110.1°  -76.4°  115.6°  -61.4°  123.6°  -41.0°  160.1°  -13.7° -164.8°   H12                         
E13     -58.8°  105.0°  -70.0°  100.7°  -73.3°  102.0°  -70.0°  119.1°  -45.3°  140.1°  -38.2°  151.2°   E13                  
H14     129.2°  -65.1°  120.1°  -69.4°  115.4°  -71.3°  117.3°  -56.3°  135.4°  -45.1°  135.5°  -32.1° -169.5°   H14           
E15     -53.4°  110.5°  -66.1°  104.4°  -70.7°  103.1°  -68.5°  119.0°  -47.4°  135.6°  -43.1°  147.5°   -5.5° -173.8°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.3°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3ik4b2 :   (LYS129)  (LEU321)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Herpetosiphon aurantiacus [TaxId: 316274]
 d1jpmc1 :   (LEU130)  (PHE322)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |L-Ala-D/L-Glu epimerase |Bacillus subtilis [TaxId: 1423]
 d1nu5a1 :   (PRO133)  (GLY326)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |Chlormuconate cycloisomerase |Pseudomonas sp. p51 [TaxId: 65067]
 d2zada2 :   (ASP127)  (ASP319)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3eeza2 :   (THR131)  (CYS322)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Silicibacter pomeroyi [TaxId: 89184]
 d4it1a2 :   (ASP140)  (HIS349)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Pseudomonas fluorescens [TaxId: 205922]
 d1jpma1 :   (LEU130)  (ASP323)   [view usage] : c.1.11.2 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |D-glucarate dehydratase-like |L-Ala-D/L-Glu epimerase |Bacillus subtilis [TaxId: 1423]
 d3ik4a2 :   (LYS129)  (LEU321)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Herpetosiphon aurantiacus [TaxId: 316274]
 d3deqa2 :   (ASP127)  (ASP319)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Thermotoga maritima [TaxId: 243274]
 d3ik4d2 :   (LYS129)  (THR323)   [view usage] : c.1.11.0 |TIM beta/alpha-barrel |Enolase C-terminal domain-like |automated matches |automated matches |Herpetosiphon aurantiacus [TaxId: 316274]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
   c.1