Protein Concepts Dictionary

Tableau information

Concept source:  d4hgqa_  amino acid (a.a.) range (LYS5)(GLN164)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EHEEHEHEHEHEHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (LYS5)   (ILE11) E1
	   (ILE11)   (ASP17) H2
	   (GLY18)   (GLN24) E3
	   (GLY26)   (ASN33) E4
	   (ASN33)   (GLY47) H5
	   (PRO49)   (GLY55) E6
	   (THR58)   (LYS69) H7
	   (ASP71)   (GLY76) E8
	   (ASP79)   (LEU91) H9
	   (VAL98)  (GLY102) E10
	  (ALA108)  (VAL114) H11
	  (GLY115)  (PRO120) E12
	  (PRO124)  (LEU130) H13
	  (GLY142)  (GLY153) H14
	  (LEU156)  (GLN164) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
H2      -77.4°   H2                                                                                                
E3      -40.6°   87.3°   E3                                                                                         
E4      133.0°   63.1°  147.6°   E4                                                                                  
H5     -163.3°  117.9° -128.6°   63.6°   H5                                                                           
E6      -32.1° -107.0°  -55.4°  142.7°  134.8°   E6                                                                    
H7      145.6°   69.5°  126.3°  -33.5°  -48.4°  175.5°   H7                                                             
E8      -42.4° -116.7°  -61.6°  142.1°  124.7°  -10.3°  171.3°   E8                                                      
H9      151.6°  -94.1°  112.9°  -60.4°  -30.6°  154.4°  -30.1°  147.4°   H9                                               
E10     -12.6°   69.5°  -52.0°  120.8° -172.1°  -37.5°  139.1°  -47.5°  156.7°   E10                                       
H11    -160.6°  -86.9°  151.2°  -27.7°   35.9°  152.4°  -27.0°  144.3°  -39.6° -148.1°   H11                                
E12     -29.4°   48.0°   52.5°  107.2°  164.4°  -60.3°  116.8°  -70.5°  134.5°  -23.5° -133.9°   E12                         
H13    -173.1°  -96.1°  137.7°  -43.2°   22.3°  154.8°  -27.5°  144.6°  -24.9° -163.7°   16.8° -144.0°   H13                  
H14     163.7°  104.7° -154.2°  -42.6°   25.8°  137.2°  -43.6°  127.7°  -44.5°  153.7°   18.4°  149.5°  -20.6°   H14           
H15     -88.7°  -73.8°  -53.3° -102.9°   89.3° -108.6°   73.5° -113.6°   62.9°  -95.8°   98.0°  -80.4°   87.1°  107.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1k1ed_ :     (LYS9)  (LEU172)   [view usage] : c.108.1.5 |HAD-like |HAD-like |Probable phosphatase YrbI |Probable phosphatase YrbI |Haemophilus influenzae, HI1679 [TaxId: 727]
 d4hgre_ :     (LYS5)  (VAL162)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
 d4hgrb_ :     (LYS5)  (GLN164)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
 d1k1eh_ :     (LYS9)  (LYS173)   [view usage] : c.108.1.5 |HAD-like |HAD-like |Probable phosphatase YrbI |Probable phosphatase YrbI |Haemophilus influenzae, HI1679 [TaxId: 727]
 d4hgqa_ :     (LYS5)  (GLN164)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
 d4hgoa_ :     (LYS5)  (VAL162)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]
 d1k1ec_ :     (LYS9)  (VAL175)   [view usage] : c.108.1.5 |HAD-like |HAD-like |Probable phosphatase YrbI |Probable phosphatase YrbI |Haemophilus influenzae, HI1679 [TaxId: 727]
 d3e81a_ :     (LYS5)  (VAL162)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 818]
 d4hgrc_ :     (LYS5)  (VAL162)   [view usage] : c.108.1.0 |HAD-like |HAD-like |automated matches |automated matches |Bacteroides thetaiotaomicron [TaxId: 226186]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.108