Protein Concepts Dictionary

Tableau information

Concept source:  d2pn8h_  amino acid (a.a.) range (PRO86)(ASP268)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EEEHHEHEHEEHEEH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (PRO86)   (GLY90) E1
	   (LYS99)  (LEU103) E2
	  (TYR110)  (TYR116) E3
	  (VAL123)  (LEU135) H4
	  (LEU135)  (ASN142) H5
	  (GLU144)  (VAL150) E6
	  (GLN153)  (THR162) H7
	  (ILE174)  (LEU180) E8
	  (GLN183)  (GLY189) H9
	  (ARG200)  (ASP206) E10
	  (ARG212)  (ASP218) E11
	  (ASP226)  (LYS240) H12
	  (GLY242)  (ALA247) E13
	  (SER253)  (ASP259) E14
	  (ASP259)  (ASP268) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
E2     -177.8°   E2                                                                                                
E3       68.4° -113.3°   E3                                                                                         
H4      -93.3°   85.2° -160.1°   H4                                                                                  
H5     -118.9°   58.9° -147.6°  -48.3°   H5                                                                           
E6       74.6° -106.5°  -22.9° -160.7°  124.8°   E6                                                                    
H7      -75.2°  105.9°   92.4°  -74.8° -120.0°  115.2°   H7                                                             
E8       91.1°  -89.1°  -51.0°  141.0°   96.6°  -28.5°  143.2°   E8                                                      
H9     -167.4°   14.2° -110.0°   86.1°   69.5° -109.0°   92.6°  -97.2°   H9                                               
E10    -109.8°   68.2°  167.6°  -26.4°   21.9°  145.1°  -99.0°  117.7°   74.5°   E10                                       
E11      67.1° -115.0°  -17.1°  147.8° -163.9°  -40.0°   75.5°  -67.8° -107.5°  174.2°   E11                                
H12    -125.8°   52.0°  149.5°  -48.4°    7.7°  127.7° -116.6°   99.2°   62.1°  -22.4°  163.1°   H12                         
E13      81.5° -100.8°  -37.4°  135.5°  159.6°  -58.7°   61.1°  -83.5°  -90.2°  154.7°   22.5°  152.3°   E13                  
E14    -133.5°   45.0°  109.6°  -88.4°  -40.7°   89.2° -148.4°   61.5°   59.1°  -62.1°  123.7°  -40.1°  126.6°   E14           
H15      74.1° -107.5°  -75.3°   92.7°  136.6°  -98.2°   17.9° -125.7°  -93.3°  116.5°  -58.3°  132.1°  -43.2° -152.3°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d2i81a_ :     (LYS7)  (THR194)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Plasmodium vivax [TaxId: 126793]
 d2pn8h_ :    (PRO86)  (ASP268)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3tjfd_ :    (PRO86)  (ASP268)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3tjfa_ :    (PRO86)  (ASP268)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3sbcc_ :     (LYS6)  (ALA193)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3tjfe_ :    (PRO86)  (ASP268)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qpma_ :    (PRO75)  (ASP257)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Larimichthys crocea [TaxId: 215358]
 d3tjka_ :    (PRO86)  (ASP268)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4k1fd_ :    (PRO13)  (GLU193)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania major [TaxId: 5664]
 d3tkpe_ :    (PRO49)  (LEU233)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qpmb_ :    (GLY79)  (ASP257)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Larimichthys crocea [TaxId: 215358]
 d3sbca_ :     (LYS6)  (ALA193)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
 d3tjfc_ :    (PRO86)  (PHE267)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d2z9sa_ :    (ALA17)  (GLN198)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2pn8a_ :    (PRO86)  (ASP268)   [view usage] : c.47.1.0 |Thioredoxin fold |Thioredoxin-like |automated matches |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3qpmd_ :    (PRO75)  (ASP257)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Larimichthys crocea [TaxId: 215358]
 d4llra_ :    (GLU17)  (GLY196)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |Tryparedoxin peroxidase (thioredoxin peroxidase homologue) |Trypanosoma cruzi [TaxId: 5693]
 d3tkrg_ :    (PRO49)  (ASN234)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3tkqa_ :    (PRO49)  (PHE230)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d4k1fa_ :    (PRO13)  (GLU193)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Leishmania major [TaxId: 5664]
 d3qpme_ :    (PRO75)  (ASP257)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Larimichthys crocea [TaxId: 215358]
 d3tkra_ :    (PRO49)  (ASN234)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3sbcb_ :     (PRO9)  (LYS195)   [view usage] : c.47.1.10 |Thioredoxin fold |Thioredoxin-like |Glutathione peroxidase-like |automated matches |Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  c.47