Tableau information
Concept source: d3a2fa1 amino acid (a.a.) range (MSE159)(SER347)
nSSEs in this Concept: 15
String of secondary struct.elems. (SSEs) defining this concept: EEEHEHEEEHHHHHH
Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
(MSE159) (GLU165) E1
(GLU167) (TRP173) E2
(TYR180) (SER185) E3
(SER186) (ASP202) H4
(ASP204) (TYR209) E5
(ASN210) (GLY227) H6
(GLU238) (ARG243) E7
(MSE247) (VAL252) E8
(ARG255) (TYR261) E9
(TYR261) (THR267) H10
(THR274) (GLY284) H11
(TYR291) (SER301) H12
(LEU305) (GLU325) H13
(LEU327) (VAL337) H14
(LEU341) (SER347) H15
Orientation angles° of SSE-pairs; those in contact shown in bold font
E1
E2 164.7° E2
E3 142.9° -22.5° E3
H4 12.5° 155.5° 133.0° H4
E5 124.8° -70.5° -91.6° 131.2° E5
H6 -127.0° 38.9° 27.9° -122.9° 105.8° H6
E7 88.6° -101.2° -107.3° 85.5° -59.0° -135.2° E7
E8 -69.2° 98.6° 86.0° -70.4° 143.4° 60.3° 155.2° E8
E9 105.9° -89.4° -110.2° 112.5° -19.0° 124.2° -50.9° 144.4° E9
H10 71.7° -123.0° -139.1° 76.3° -55.0° 160.8° 37.9° -134.7° -36.8° H10
H11 21.7° -169.6° 163.3° 33.1° 104.9° -139.7° 83.6° -79.5° 86.5° 56.3° H11
H12 109.7° -59.5° -54.0° 110.9° -111.9° -26.3° -160.5° 40.7° 125.8° 153.7° 115.9° H12
H13 -38.9° 137.9° 121.1° -29.0° 118.2° -128.0° 61.6° -93.6° 103.4° 68.3° 52.5° -129.8° H13
H14 -71.9° 101.8° 85.1° -59.8° 118.6° -98.9° 63.8° -97.6° 114.7° 91.1° 88.7° -114.5° -36.4° H14
H15 109.6° -85.2° -103.6° 113.4° -20.1° -123.2° -40.2° 157.8° 13.5° 37.9° 92.8° -132.1° 98.1° 103.0°
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1° about each orientation angle shown above.
Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
d1qhta1 : (THR154) (SER347) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Thermococcus sp., 9on-7 [TaxId: 35749]
d2vwja1 : (ILE160) (SER347) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Thermococcus gorgonarius [TaxId: 71997]
d4k8za1 : (MET159) (SER347) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Thermococcus kodakarensis [TaxId: 69014]
d1qqca1 : (MET159) (SER347) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Desulfurococcus tok [TaxId: 108142]
d1d5aa1 : (GLY167) (SER347) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Desulfurococcus tok [TaxId: 108142]
d4ahca1 : (ILE160) (SER347) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d2jgua1 : (MET159) (SER347) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d3a2fa1 : (MSE159) (SER347) [view usage] : c.55.3.0 |Ribonuclease H-like motif |Ribonuclease H-like |automated matches |automated matches |Pyrococcus furiosus [TaxId: 2261]
d1wn7a1 : (MET159) (SER347) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Pyrococcus kodakaraensis [TaxId: 311400]
d1wnsa1 : (LEU158) (SER347) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |Exonuclease domain of family B DNA polymerases |Pyrococcus kodakaraensis [TaxId: 311400]
d2vwka1 : (LEU158) (VAL337) [view usage] : c.55.3.5 |Ribonuclease H-like motif |Ribonuclease H-like |DnaQ-like 3'-5' exonuclease |automated matches |Thermococcus gorgonarius [TaxId: 71997]
List of distinct SCOP folds where this concept is used (in one or more of its domains):
c.55