Protein Concepts Dictionary

Tableau information

Concept source:  d4albb_  amino acid (a.a.) range (GLY6)(ALA158)

nSSEs in this Concept: 15

String of secondary struct.elems. (SSEs) defining this concept: EEEEEEEEHHEEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (GLY6)   (GLU14) E1
	   (GLU18)   (LYS24) E2
	   (HIS27)   (SER35) E3
	   (GLY40)   (ASP45) E4
	   (VAL48)   (THR54) E5
	   (GLY56)   (TRP62) E6
	   (GLY67)   (MET75) E7
	   (LYS79)   (PRO88) E8
	   (PRO88)   (HIS94) H9
	  (HIS105)  (LYS115) H10
	  (LYS115)  (PRO120) E11
	  (TYR122)  (THR131) E12
	  (THR131)  (GLY137) E13
	  (ASN140)  (SER145) H14
	  (MET152)  (ALA158) H15

Orientation angles° of SSE-pairs; those in contact shown in bold font
          E1                                                                                                       
E2      159.7°   E2                                                                                                
E3      -37.1°  163.0°   E3                                                                                         
E4      146.0°  -13.9° -176.8°   E4                                                                                  
E5       83.9°  -90.8°   96.5°  -84.0°   E5                                                                           
E6      -84.2°   94.2°  -84.6°   96.1°  158.5°   E6                                                                    
E7      100.5°  -83.4°   95.5°  -83.4°  -29.3°  172.2°   E7                                                             
E8      -74.6°   97.9°  -86.3°   95.3°  140.1°  -18.4°  169.3°   E8                                                      
H9      -70.7°  129.6°  -33.8°  143.0° -101.4°   91.5°  -84.4° -102.6°   H9                                               
H10      37.3° -122.8°   73.3° -109.9°   84.6°  -75.1°  112.4°  -57.9°  107.1°   H10                                       
E11      66.8° -103.2°   88.5°  -93.0°   20.7° -138.7°   49.0° -120.7°  104.8°  -64.0°   E11                                
E12     115.2°  -78.8°   91.1°  -86.3°  -62.1°  139.4°  -32.8°  157.9°   65.3°  141.7°  -81.2°   E12                         
E13    -163.2°  -16.5°  149.0°  -28.5° -106.2°   81.8°  -94.4°   89.4°  118.9° -128.7° -119.6°  -81.6°   E13                  
H14     -30.0° -159.1°   23.0° -159.1°  109.7°  -65.3°  116.3°  -64.0°   51.8°   57.9°   95.4°  113.8°  144.0°   H14           
H15    -130.3°   55.0° -119.8°   58.2°  -50.4°  145.4°  -29.8°  152.9°  -97.1° -132.7°  -70.8°  -31.8°   64.6°  142.7°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3nadb_ :     (MET9)  (GLY159)   [view usage] : b.60.1.6 |Lipocalins |Lipocalins |Phenolic acid decarboxylase (PAD) |automated matches |Bacillus pumilus [TaxId: 1408]
 d4alba_ :     (GLY6)  (GLY159)   [view usage] : b.60.1.6 |Lipocalins |Lipocalins |Phenolic acid decarboxylase (PAD) |automated matches |Bacillus subtilis [TaxId: 1423]
 d2wsja_ :    (GLY13)  (ASN165)   [view usage] : b.60.1.6 |Lipocalins |Lipocalins |Phenolic acid decarboxylase (PAD) |P-coumaric acid decarboxylase, pdc |Lactobacillus plantarum [TaxId: 1590]
 d2p8ga_ :     (HIS8)  (GLY159)   [view usage] : b.60.1.6 |Lipocalins |Lipocalins |Phenolic acid decarboxylase (PAD) |automated matches |Bacillus subtilis [TaxId: 1423]
 d3nada_ :     (MET9)  (ALA158)   [view usage] : b.60.1.6 |Lipocalins |Lipocalins |Phenolic acid decarboxylase (PAD) |automated matches |Bacillus pumilus [TaxId: 1408]
 d4albb_ :     (GLY6)  (ALA158)   [view usage] : b.60.1.6 |Lipocalins |Lipocalins |Phenolic acid decarboxylase (PAD) |automated matches |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.60