Protein Concepts Dictionary

Tableau information

Concept source:  d1vg2a_  amino acid (a.a.) range (SER10)(SER283)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HHHHHHHHHHHHHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (SER10)   (PHE27) H1
	   (GLU30)   (LEU36) H2
	   (LEU43)   (GLY56) H3
	   (GLY60)   (GLY86) H4
	  (ASP102)  (ILE123) H5
	  (ASN125)  (ARG150) H6
	  (THR155)  (LYS166) H7
	  (GLY168)  (GLN176) H8
	  (LEU177)  (GLY183) H9
	  (GLU187)  (MET212) H10
	  (PHE230)  (PRO240) H11
	  (PRO240)  (ARG249) H12
	  (TRP251)  (GLY262) H13
	  (ILE263)  (SER283) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
H2      142.1°   H2                                                                                         
H3      127.2°  -81.5°   H3                                                                                  
H4      -62.1°   82.2°  156.1°   H4                                                                           
H5      116.9°  -93.5°  -12.0° -163.2°   H5                                                                    
H6      -77.8°   65.6°  141.4°  -16.9°  151.9°   H6                                                             
H7       80.5° -133.9°  -79.6°  124.2°   70.0° -138.0°   H7                                                      
H8      115.6° -101.9°  -34.5° -168.9°   27.8°  165.7°  -46.1°   H8                                               
H9       73.3° -133.4°  -54.6°  132.4°  -43.6°  142.7°  -58.7°  -51.0°   H9                                        
H10     -82.0°   71.3°  150.7°  -29.9°  160.6°  -30.1°  111.5°  141.7° -154.5°   H10                                
H11      98.9°   53.8°  -87.1°   69.2°  -95.1°   57.7° -162.4° -121.6°  104.1°  -85.7°   H11                         
H12     -30.4°  134.4° -143.3°   57.3° -131.3°  -73.9°   69.3°  114.6°  -91.7°   63.1° -118.3°   H12                  
H13     162.8°  -51.4°   35.7° -133.5°   46.0°  117.1°  -92.0°  -50.8°   89.6° -115.2°   83.6° -156.9°   H13           
H14     109.1° -106.8°   30.5°  171.0°   20.6°  171.8°  -49.4°  -11.5°   40.4° -152.8°  115.7° -114.4°   55.5°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1vg6a_ :     (ASN9)  (ASN282)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d1v4ea_ :    (SER10)  (SER283)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d1vg2a_ :    (SER10)  (SER283)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d1v4ja_ :    (SER10)  (SER283)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d1vg4a_ :    (SER10)  (SER283)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]
 d1v4ia_ :     (ASN9)  (SER283)   [view usage] : a.128.1.1 |Terpenoid synthases |Terpenoid synthases |Isoprenyl diphosphate synthases |Octoprenyl-diphosphate synthase |Thermotoga maritima [TaxId: 2336]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.128