Protein Concepts Dictionary

Tableau information

Concept source:  d4bjka_  amino acid (a.a.) range (LEU261)(ARG475)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HHHHHEEEEHHHEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (LEU261)  (SER267) H1
	  (SER277)  (HIS309) H2
	  (VAL313)  (ILE323) H3
	  (ASN333)  (MET339) H4
	  (MET339)  (ASP353) H5
	  (LEU357)  (LYS362) E6
	  (ALA365)  (GLY370) E7
	  (SER371)  (GLY377) E8
	  (GLY377)  (SER383) E9
	  (PRO384)  (ASP390) H10
	  (VAL408)  (GLY414) H11
	  (LYS426)  (TYR443) H12
	  (TYR443)  (ARG449) E13
	  (VAL471)  (ARG475) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
H2      139.9°   H2                                                                                         
H3       76.0° -119.7°   H3                                                                                  
H4      -92.3°   49.9°  136.4°   H4                                                                           
H5      -77.7°   97.4° -142.8°  -70.1°   H5                                                                    
E6      -14.4° -146.8°   82.1°  -96.9°  -66.8°   E6                                                             
E7      122.4°  -20.9°  109.3°  -43.4° -106.9° -133.3°   E7                                                      
E8      -78.4°  138.6°  -77.4°  141.9°   71.9°  -66.5°  158.9°   E8                                               
E9      142.8°  -39.2°   81.6°   83.7° -133.6°  156.8°   40.6° -125.2°   E9                                        
H10     110.5°  -32.5°  106.0°   39.0° -107.6°  121.9°   12.1°  171.0°  -48.5°   H10                                
H11    -110.1°  109.0°  -80.1°  142.0°   84.8°   98.8° -127.4°   32.3°  -94.7° -139.2°   H11                         
H12     170.6°  -39.8°  -96.4°   89.4°  111.6°  172.3°  -54.3°  105.8°  -28.3°  -65.8°   73.5°   H12                  
E13     -91.6°  -77.1°  163.3°  -53.9°   20.5°   83.4°  -86.8°   89.2° -114.6°  -88.8°   93.9°  -96.9°   E13           
E14     110.2°   82.2°  -38.3°  117.0° -168.4° -119.2°   76.6° -100.8°   43.4°   78.2°  -84.4°   61.0°  157.4°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.6°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3gw9a_ :   (ASP260)  (LYS477)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d3g1qa_ :   (ASP260)  (ARG475)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d2ve4b_ :   (ALA224)  (SER442)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
 d3c6gb_ :   (PHE276)  (ARG500)   [view usage] : a.104.1.1 |Cytochrome P450 |Cytochrome P450 |Cytochrome P450 |Vitamin D 25-hydroxylase Cyp2R1 |Human (Homo sapiens) [TaxId: 9606]
 d3k9ya_ :   (SER312)  (PRO513)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Norway rat (Rattus norvegicus) [TaxId: 10116]
 d2ve4a_ :   (ALA224)  (HIS441)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Synechocystis sp. [TaxId: 1148]
 d4bjka_ :   (LEU261)  (ARG475)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]
 d3gw9b_ :   (ASP260)  (ARG475)   [view usage] : a.104.1.0 |Cytochrome P450 |Cytochrome P450 |automated matches |automated matches |Trypanosome (Trypanosoma brucei) [TaxId: 5691]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 a.104