Protein Concepts Dictionary

Tableau information

Concept source:  d3bpza_  amino acid (a.a.) range (CYS508)(ILE636)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HHHEEEEEEHEEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	  (CYS508)  (MET515) H1
	  (MET515)  (ALA521) H2
	  (PRO523)  (LEU533) H3
	  (LYS534)  (PRO540) E4
	  (ILE544)  (GLY548) E5
	  (LYS552)  (ILE557) E6
	  (GLY560)  (THR566) E7
	  (LYS570)  (ASP576) E8
	  (GLY577)  (GLY581) E9
	  (GLU582)  (THR587) H10
	  (ALA593)  (ALA597) E11
	  (LEU603)  (SER607) E12
	  (SER607)  (PRO619) H13
	  (ARG623)  (ILE636) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
H2      -97.0°   H2                                                                                         
H3      125.6° -132.7°   H3                                                                                  
E4       80.9° -157.5°   61.3°   E4                                                                           
E5      -47.7°  107.5°   90.7°   87.8°   E5                                                                    
E6       94.5°  -85.8° -107.6°  -72.0° -140.2°   E6                                                             
E7      -48.8°  118.5°   83.6°   76.9°  -11.1° -135.3°   E7                                                      
E8      126.2°   35.7° -108.2° -131.0°  141.2°  -66.4°  152.1°   E8                                               
E9      -83.4°  111.4°   61.3°   90.8°   35.8°  162.8°   36.0° -128.2°   E9                                        
H10     -73.6°   73.5°   97.7°  126.3°   40.8° -154.3°   50.7°  101.9°   40.7°   H10                                
E11     139.1°  -85.9°  -75.0°  -81.5° -165.0°   44.9°  155.0°  -50.8° -133.4° -144.3°   E11                         
E12     -79.8°   72.6°   93.8°  128.3°   45.3°  156.7°  -54.6°   98.6°  -39.7°    6.3° -138.5°   E12                  
H13     -62.9°   35.2°  166.1° -132.6°  -89.0°   81.0°  -98.0°   64.6° -112.6°  -73.2°  105.9°   76.2°   H13           
H14      65.4°  162.1°  -64.7°   24.0°  -63.7°   92.1°  -52.9°  155.0°  -71.4° -102.9°  105.1° -105.6° -127.0°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d3etqa_ :   (ARG509)  (ALA629)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d3otfa_ :   (CYS586)  (ARG713)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d1q5oa_ :   (CYS508)  (GLY637)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |HCN pacemaker channel |Mouse (Mus musculus) [TaxId: 10090]
 d4muvb_ :   (ASP222)  (SER354)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mesorhizobium loti [TaxId: 266835]
 d2ptma_ :   (ARG537)  (ARG661)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]
 d3u0za_ :   (ARG456)  (ILE583)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mouse (Mus musculus) [TaxId: 10090]
 d4muva_ :   (SER215)  (ALA353)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Mesorhizobium loti [TaxId: 266835]
 d2q0aa_ :   (CYS508)  (ASP636)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |HCN pacemaker channel |Mouse (Mus musculus) [TaxId: 10090]
 d3u10a_ :   (ARG536)  (GLY664)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |automated matches |Human (Homo sapiens) [TaxId: 9606]
 d3bpza_ :   (CYS508)  (ILE636)   [view usage] : b.82.3.2 |Double-stranded beta-helix |cAMP-binding domain-like |cAMP-binding domain |HCN pacemaker channel |Mouse (Mus musculus) [TaxId: 10090]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82