Protein Concepts Dictionary

Tableau information

Concept source:  d4meta_  amino acid (a.a.) range (ILE25)(ASP156)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HHHEEEEEEEEEEE

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	   (ILE25)   (ASN31) H1
	   (ASN31)   (VAL36) H2
	   (PRO38)   (THR44) H3
	   (MET48)   (SER53) E4
	   (THR55)   (LYS61) E5
	   (GLY63)   (THR69) E6
	   (ASN78)   (LYS87) E7
	   (LEU94)   (LYS98) E8
	  (ALA100)  (ILE106) E9
	  (ALA110)  (VAL115) E10
	  (ARG120)  (GLU128) E11
	  (GLY129)  (PRO135) E12
	  (PRO139)  (ALA144) E13
	  (GLU147)  (ASP156) E14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
H2      -93.1°   H2                                                                                         
H3      106.7°  -79.1°   H3                                                                                  
E4      130.3° -133.8°  -98.9°   E4                                                                           
E5      103.6° -160.5°   86.3°  -36.1°   E5                                                                    
E6      -68.3°   28.7°   74.2°  161.3°  154.9°   E6                                                             
E7      115.0° -141.8° -113.8°  -17.2°  -36.6°  168.5°   E7                                                      
E8      -68.6°   30.3°   71.2°  161.1°  151.8°   -3.3°  171.4°   E8                                               
E9       97.4°  107.3° -154.7°  -58.6°  -80.9°  123.0°  -46.7°  126.3°   E9                                        
E10     -73.8°   87.6°   33.7°  116.1°   87.3°  -67.6°  123.7°  -64.5° -163.3°   E10                                
E11      99.6°   76.2° -144.6°  -80.9° -110.4°   94.6°  -74.1°   97.8°  -31.2°  162.2°   E11                         
E12     -93.1°  -78.5°   13.7°  109.3°   90.3°  -67.2°  122.4°  -64.0°  167.6°   20.8° -152.2°   E12                  
E13     105.3° -106.9° -147.0°  -53.0°  -78.7°  126.0°  -42.9°  129.2°    7.9°  165.5°  -31.7° -160.3°   E13           
E14     -71.1°   43.1°   54.4°  152.3°  133.7°  -21.8°  168.1°  -18.5°  144.7°  -46.5°  115.9°  -45.8° -147.6°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1uw8a_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |Oxalate decarboxylase OxdC (YvrK) |Bacillus subtilis [TaxId: 1423]
 d2uy8a_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
 d2v09a_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
 d4meta_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 224308]
 d2uy9a_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
 d2uyba_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]
 d2uyaa_ :    (ILE25)  (ASP156)   [view usage] : b.82.1.2 |Double-stranded beta-helix |RmlC-like cupins |Germin/Seed storage 7S protein |automated matches |Bacillus subtilis [TaxId: 1423]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
  b.82