Protein Concepts Dictionary

Tableau information

Concept source:  d1obja_  amino acid (a.a.) range (SER3)(ILE216)

nSSEs in this Concept: 14

String of secondary struct.elems. (SSEs) defining this concept: HHEEHEHEHEHEHH

Each SSE's a.a.range: (start resi) (end resi) SSEtype (H=Helix; E=Strand) followed by a numeric SSE ID:
	    (SER3)   (GLY14) H1
	   (SER17)   (ALA31) H2
	   (VAL40)   (SER45) E3
	   (ILE57)   (ASP63) E4
	   (ALA88)   (GLY98) H5
	   (GLY98)  (THR108) E6
	  (SER132)  (GLY142) H7
	  (ALA147)  (THR152) E8
	  (GLY154)  (CYS163) H9
	  (THR165)  (SER171) E10
	  (SER171)  (PRO176) H11
	  (THR189)  (ALA195) E12
	  (ALA197)  (MET207) H13
	  (ARG210)  (ILE216) H14

Orientation angles° of SSE-pairs; those in contact shown in bold font
          H1                                                                                                
H2      146.6°   H2                                                                                         
E3        3.8° -143.3°   E3                                                                                  
E4     -142.5°  -44.2°  143.8°   E4                                                                           
H5      -30.5°  133.7°  -28.3° -169.0°   H5                                                                    
E6      162.0°   17.9°  159.5°  -31.6°  149.6°   E6                                                             
H7       59.8°  108.5°  -57.1°  152.6°   29.6°  121.5°   H7                                                      
E8     -146.3°  -63.0°  150.0°  -34.6°  155.9°  -45.2° -142.3°   E8                                               
H9       81.2°   79.7°  -77.8°  123.8°  -55.1°   94.5°  -29.5°  130.6°   H9                                        
E10     -96.2° -109.1°   99.9°  -66.5°  117.2°  -92.4°  137.8°  -50.1° -164.7°   E10                                
H11      46.0° -110.7°   45.9°  -99.0°   71.2° -118.4°   94.0° -123.7°   98.4°   90.3°   H11                         
E12      68.2°   93.7°  -64.9°  137.7°  -41.0°  108.6°  -16.8°  141.7°  -14.1°  154.6°   92.1°   E12                  
H13      63.1° -122.7°   66.0°  -83.3°   92.9° -114.7°  122.5°  -87.6°  141.4°  -44.2°   46.4°  130.4°   H13           
H14     -83.1°   85.1°  -80.1°  128.5°  -53.7°   97.2°  -24.3°  124.6°  -14.5°  150.5° -109.2°  -17.3° -146.2°       
Footnote: Inferred from this concept's usages (listed below) was the angular variance of 1σ = ±4.1°  about each orientation angle shown above.

Loci of concept usages (shown as a range of a.a. residue ids) in SCOP(v2.05) domains, along with their brief legend taken from SCOP
 d1obja_ :     (SER3)  (ILE216)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
 d1o9oa_ :     (SER3)  (ILE216)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
 d1ocka_ :     (SER3)  (ILE216)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
 d1o9na_ :     (SER3)  (ILE216)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
 d1obia_ :     (SER3)  (ILE216)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]
 d1obla_ :     (SER3)  (ILE216)   [view usage] : c.117.1.1 |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Amidase signature (AS) enzymes |Malonamidase E2 |Bradyrhizobium japonicum [TaxId: 375]

List of distinct SCOP folds where this concept is used (in one or more of its domains):
 c.117